FlyMine release 10.0

FlyMine release 10.0 is now out, see the release notes for major changes. The problems with upgrading userprofile databases between releases should now be fixed.

There is a new stable branch of InterMine: branches/flymine_release_10_0_branch. Database dumps of FlyMine will be available soon.

• Read Post
• rns
• 07/12/07 12:14:03

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Updated InterMine site

We have updated and added a lot of documentation, please let us know if there is anything you can't find or if you have suggestions for documents to add. The links on the home page now take you to a contents pages for each section.

Our trac installation is now at www.intermine.org.

Updated on 03/12/07 16:56:09

• Read Post
• rns
• 29/11/07 17:50:46

Welcome to the InterMine and FlyMine Trac server

InterMine

InterMine is a general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.

• Getting started
  • Prerequisites
  • Getting the source code
  • Running the tests
  • Building and running the testmodel application
• The InterMine build system - projects
• The ObjectStore?
• ModelsAndData?
• Data Integration
• WebApp

InterMine/Bio

InterMine/Bio is InterMine used for biological data.

• Example data mines
  • FlyMine - go to the FlyMine web site to see InterMine/Bio in action. FlyMine is an integrated data source for Drosophila and Anopheles.
  • MalariaMine - a smaller data warehouse example with a corresponding tutorial
• Setting up a local copy of FlyMine:
  • Set up a local copy of FlyMine (to query with Java API or webapp)
  • Integrate your own data with a local copy of FlyMine
• Creating a new source
• Current sources
• BioModelConventions
• How to make a Mine
• some details of post processing steps
• CreatingAMine?

About

• InterMine is actively developed by the FlyMine & Cambridge UK modENCODE Teams
• To Contact us