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Project specific properties for MalariaMine

Each sub-directory needs a build.xml and a project.properties file. See ProjectProperties for a description of the project.properties. Build files are generally empty, delegating to the standard InterMine build files.

NOTE: these files are available in the bio/tutorial/malariamine/ directory. See bio/tutorial/malariamine/dbmodel/, bio/tutorial/malariamine/integrate/, bio/tutorial/malariamine/postprocess/ and bio/tutorial/malariamine/webapp/.

dbmodel

build.xml:

<project name="malariamine-dbmodel" default="default" basedir=".">
  <description>represents the production objectstore and the model therein</description>
  <import file="../../imbuild/objectstore.xml"/>
</project>

project.properties:

compile.dependencies = intermine/integrate/main

objectstore.name = os.production
model.name = genomic

core.model.path = bio/core

extra.model.paths.start = bio/core/genomic_additions.xml bio/sources/so/so_additions.xml
extra.model.paths.end = bio/core/shortcuts.xml

# choose the intermine.properties file from $HOME:
intermine.properties.file = malariamine.properties
default.intermine.properties.file = ../default.intermine.integrate.properties

integrate

build.xml:

<project name="malaria-integration" default="default" basedir=".">
  <description>perform integration</description>
  
  <import file="../../imbuild/integrate.xml"/>
</project>

project.properties:

compile.dependencies = intermine/integrate/main,\
                       malariamine/dbmodel,\
                       bio/core/main

# choose the intermine.properties file from $HOME:
intermine.properties.file = malariamine.properties
default.intermine.properties.file = ../default.intermine.integrate.properties

# the sources projects sometimes need a model to compile (mostly the postprocessing code), but
# there is a different model in each Mine so we need to tell the dependency system (see
# Dependencies.java) to add this model project to the dependency list of all projects that we
# depend on
extra.project.dependencies = malariamine/dbmodel

postprocess

build.xml:

<project name="malariamine-postprocess" default="default" basedir=".">
  <description>perform post processing for malariamine</description>
  <import file="../../imbuild/postprocess.xml"/>
</project>

project.properties:

compile.dependencies = bio/postprocess/main, bio/core/main, malariamine/dbmodel

gen.code = true

# choose the intermine.properties file from $HOME:
intermine.properties.file = malariamine.properties
default.intermine.properties.file = ../default.intermine.integrate.properties

objectStoreWriter = osw.production

# the bio/postprocess projects need a model to compile, but there is a different model in each Mine
# so we need to tell the dependency system (see Dependencies.java) to add this model project to the
# dependency list of all projects that we depend on
extra.project.dependencies = malariamine/dbmodel

Webapp

webapp

build.xml:

<project name="malariamine-webapp" default="default" basedir=".">

  <description>build, test, package malariamine-webapp</description>
  <import file="../../imbuild/application.xml"/>

  <target name="-pre-jar"
          depends="application.-pre-jar, -add-struts-config"/>

  <target name="-add-struts-config"
          description="Append the struts config modifications to the webapp"
  	  depends="-pre-init">
    <unwar src="${dist.war}" dest="${build.dir}/webapp/">
      <patternset>
  	<include name="WEB-INF/struts-config.xml"/>
        <include name="WEB-INF/tiles-defs.xml"/>
      </patternset>
    </unwar>

    <loadfile property="model.struts.config" srcFile="./resources/struts-config-model.xml"/>

    <replace file="${build.dir}/webapp/WEB-INF/struts-config.xml" value="${model.struts.config}">
      <!-- can't use normal token as xml must be parseable before this replacement -->
      <replacetoken><![CDATA[<!--@MODEL_INCLUDE@-->]]></replacetoken>
    </replace>

    <loadfile property="model.tiles.defs" srcFile="./resources/tiles-defs-model.xml"/>

    <replace file="${build.dir}/webapp/WEB-INF/tiles-defs.xml" value="${model.tiles.defs}">
      <!-- can't use normal token as xml must be parseable before this replacement -->
      <replacetoken><![CDATA[<!--@MODEL_INCLUDE@-->]]></replacetoken>
    </replace>

    <war destfile="${dist.war}" update="true" >
      <webinf dir="${build.dir}/webapp/WEB-INF/">
  	<filename name="struts-config.xml" />
        <filename name="tiles-defs.xml" />
      </webinf>
    </war>

  </target>
</project>

project.properties:

# Things that should be build before constructing a webapp

compile.dependencies = intermine/webapp/main,\
                       malariamine/dbmodel,\
                       intermine/webtasks/main,\
                       bio/core/main,\
                       bio/webapp
                       
# The products and their immediate library dependencies of these projects
# will be included in the webapp

deploy.dependencies = malariamine/dbmodel

objectstore.name = os.production

userprofile.objectstorewriter.name = osw.userprofile-production
userprofile.objectstore.name = os.userprofile-production
userprofile.db.name = db.userprofile-production
userprofile.model.name = userprofile

# the project that will make the webapp we will add to
base.webapp.path = bio/webapp/dist/bio-webapp.war

# choose the intermine.properties file from $HOME:
intermine.properties.file = malariamine.properties
default.intermine.properties.file = ../default.intermine.webapp.properties

# the core projects sometimes need a model to compile, but there is a
# different model in each Mine so we need to tell the dependency
# system (see Dependencies.java) to add this model project to the
# dependency list of all projects that we depend on
extra.project.dependencies = malariamine/dbmodel

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