DataCategories

Data category pages include various aspects of a concept on a single page. Category pages include:

  • logo
  • short description
  • external links
  • bulk download queries
  • template queries
  • direct links to QueryBuilder

All of the above should relate to a single concept, eg. Genomics or Interactions.

Data categories are defined in <MINE>/webapp/resources/webapp/WEB-INF/aspects.xml.

Example of an entry in the configuration file: 

  <aspect name="Genomics">
    <subtitle>Genome annotation</subtitle>
    <icon-image>model/genomics.gif</icon-image>
    <large-image>model/genomics.gif</large-image>
    <intro-text>
      The gene structure and other genome annotation in FlyMine are provided by
      a variety of curated source databases.  In most cases FlyMine includes
      all genome features that have chromosomal locations (eg. genes and repeat regions).
    </intro-text>
    <tile-name>model/genomics.jsp</tile-name>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Ensembl" url="http://www.ensembl.org/Anopheles_gambiae"/>
  </aspect>

Configuration

  • logo
    • <icon-image>model/genomics.gif</icon-image> - appears on the home and data category pages
    • <large-image>model/genomics.gif</large-image> - appears on the individual data category page
  • short description
    • <intro-text>TEXT HERE</intro-text>
    • appears on the top of the data category page
  • external links
    • <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    • appear on the top right corner of the data category page
  • bulk download queries
    • appear on the top right corner of the data category page
  • template queries
    • appear on the data category page
  • direct links to QueryBuilder
    • links will appear at the bottom of the data categories page

To configure which template queries appear on a data category page, tag the template. See: Tagging.

To configure which links show up under the Query starting points, the classes can be tagged from QueryBuilder > Browse Data Model e.g. aspect:Genomics