Most Common Errors

Below is a list of the most commonly encountered errors in InterMine, and their fixes.

Exception caught: java.lang.IllegalArgumentException: Unknown class name Protein in package org.flymine.model.genomics

Caused by: java.lang.IllegalArgumentException: Unable to find keys for
source protfeatures_source in file protfeatur
es_source_keys.properties

It is expecting to find some keys to integrate data from that source. Do you have a keys file in the bio/sources/protfeatures/resources?

BUILD FAILED
/scratch/bi/plabaj/FlyMine/imbuild/integrate.xml:53: The following error
occurred while executing this line:
/scratch/bi/plabaj/FlyMine/imbuild/source.xml:256:
java.lang.OutOfMemoryError: Java heap space 

There is an ANT_OPTS environment variable you need to set, put the same as you would for java options. I would recommend at least 512MB for loading if there is enough RAM on the machine.