Timeline
23/07/08:
- 16:56 Changeset [16281] by julie
- copy [16280] change to 14.0 branch
- 16:54 Changeset [16280] by julie
- updated datasources for 14.0
- 10:02 Changeset [16277] by hilde
- added new definitions
22/07/08:
- 16:38 Changeset [16275] by julie
- corrected method signatures. Fixes #1774
- 15:22 Changeset [16274] by julie
- for enrichment widgets, don't export label field if it's the same as the …
- 13:37 Changeset [16273] by julie
- revert change [16138] in 14.0 branch. This change removed the field …
- 10:43 Changeset [16272] by contrino
- modmine tiles: added modencode aspect, some correction
21/07/08:
- 17:02 Changeset [16271] by kmr
- Merged [16269] into 14.0 branch.
- 16:56 Changeset [16270] by kmr
- Minor fixes for new export system. Refs #1673.
- 16:38 Changeset [16269] by kmr
- Fixed build-db to add the blob_value column to the intermine_metadata …
- 15:42 Changeset [16268] by julie
- updated precomputed query. replaced datasource with dataset
- 14:30 Changeset [16267] by kmr
- Attempt to catch NumberFormatException? when parsing date strings.
- 12:30 Changeset [16266] by julie
- add extra column for label to table widget export. Refs #1720
18/07/08:
- 17:54 Changeset [16265] by kmr
- More code for the new export system. Refs #1673.
- 16:58 Changeset [16264] by kmr
- Initial code to improve exporting. Refs #1673.
- 16:55 Changeset [16263] by kmr
- Created ticket branch. Refs #1673.
- 16:53 Changeset [16262] by kmr
- Created a directory for ticket branches.
- 16:35 Changeset [16261] by contrino
- modmine tiles: added news to local begin.
- 16:19 Changeset [16260] by julie
- add checkstyle to affy probes project
- 15:03 Changeset [16259] by kmr
- Fixed Eclipse warnings.
- 15:02 Changeset [16258] by kmr
- Fixed Eclipse warnings.
- 14:45 Changeset [16257] by contrino
- modencode tiles: added submissions tile. minor improvements elsewhere
- 11:51 Changeset [16256] by julie
- checkstyle
- 10:13 Changeset [16255] by julie
- revert change [16242]
17/07/08:
- 17:34 Changeset [16254] by kmr
- Fixed fasta exporter so that extra FASTA header fields can be configured …
- 17:32 Changeset [16253] by kmr
- Fixed problem webconfig for AnalysisResult?.
- 17:30 Changeset [16252] by kmr
- Fixed chromosomeLocDisplayer.jsp to work when chromosome is not set. Refs …
- 16:10 2008/07/17/16.07 edited by kmr
- (diff)
- 16:10 2008/07/17/16.07 edited by kmr
- 16:05 Changeset [16251] by julie
- added transcript acceptance tests
- 16:04 Changeset [16250] by julie
- in affy probes, make synonyms
- 15:48 2008/07/17/15.48 edited by kmr
- 15:35 Changeset [16249] by kmr
- Merged [16237] into 14.0 branch.
- 13:20 Changeset [16248] by julie
- don't create synonyms for go terms
- 11:17 Changeset [16247] by hilde
- updated GO evidence codes
- 10:26 Changeset [16246] by julie
- for PDB, set synonym for protein
- 10:21 Changeset [16245] by julie
- revert [16240], protein structures can't have synonyms
16/07/08:
- 15:26 Changeset [16243] by julie
- updated acceptance tests with new model
- 14:43 Changeset [16242] by julie
- in biogrid, create synonyms for genes
- 14:31 Changeset [16241] by julie
- update keys for protein structure
- 14:27 Changeset [16240] by julie
- for protein structures, make synonyms for proteins
- 14:16 Changeset [16239] by julie
- in anoph-expr, create synonyms for genes
- 14:09 Changeset [16238] by kmr
- Better error message when parsing dates.
- 13:50 Changeset [16237] by kmr
- Added missing DataSource? key for fasta sources.
- 12:54 Changeset [16236] by julie
- in miranda, set organism for MRNAs
15/07/08:
- 16:46 Changeset [16235] by julie
- remove evidence collection from annotation
- 16:42 Changeset [16234] by julie
- add datasets to go terms
- 16:37 Changeset [16233] by julie
- create synonyms for go terms. Refs #1709
- 16:20 Changeset [16232] by julie
- create synonyms for protein domains. Refs #1709
- 15:43 Changeset [16231] by julie
- create synonyms for protein structures, fixed classpath, updated test. …
- 15:18 Changeset [16230] by julie
- updated path queries to use new methods. Refs #1733
- 15:17 Changeset [16228] by julie
- removed transcript key from miranda
- 14:26 Changeset [16227] by julie
- added chromosome key for miranda
- 13:20 Changeset [16226] by julie
- renamed branch for consistency
- 13:16 Changeset [16225] by julie
- Branch for 14.0 release
- 13:14 Changeset [16224] by julie
- Tag for 14.0
- 12:51 Changeset [16223] by kmr
- When writing GFF ignore chromosomes with no length.
- 09:27 Changeset [16221] by julie
- restore news and tips to home page
14/07/08:
- 20:05 Changeset [16219] by jakub
- Added documentation and build script for webservice client distribution …
- 19:56 Changeset [16218] by jakub
- Adding webservice client samples with new directory structure
- 19:54 Changeset [16217] by jakub
- Removing samples with old hierarchy structure
- 18:20 Changeset [16216] by contrino
- modmine tiles: added project list to home page
- 17:58 Changeset [16215] by rns
- Ignore errors in FullParser? where referenced type has changed.
- 16:50 Changeset [16214] by julie
- whoops
- 16:49 Changeset [16213] by julie
- put selected ids onto the request for list analysis page
- 16:13 Changeset [16212] by julie
- fixed eclipse warnings
- 15:17 Changeset [16211] by julie
- missing file from [16120]
- 15:15 Changeset [16210] by julie
- count genes/proteins on protein domain enrichmetn widget, not protein …
- 14:42 Changeset [16209] by jakub
- Fixed problem when user returned from login page to link page and …
- 14:23 Changeset [16208] by jakub
- Fixed error in IE during loading result count.
- 14:18 Changeset [16207] by julie
- increase bottom padding for enrichment widgets
- 13:57 Changeset [16206] by jakub
- Javascript validation that bags are not used when link is generated.
- 13:54 Changeset [16205] by jakub
- Fixed problem when Show results link didn't work.
- 13:52 Changeset [16204] by jakub
- Added setting of XML response output.
- 13:36 Changeset [16203] by julie
- undo change [16029] for now. Internet Explorer doesn't support …
- 13:35 Changeset [16202] by julie
- updated text on toolbar menu
- 13:15 Changeset [16201] by contrino
- modencode tiles: cleaning
- 12:56 Changeset [16200] by contrino
- modmine tiles: added providers tile to menu
- 11:27 Changeset [16199] by contrino
- modencode tiles: some cleaning, additions, corrections
- 09:53 Changeset [16198] by julie
- move text to properties file
- 09:44 Changeset [16197] by julie
- don't show add button if user doesn't have any bags to add to
- 09:30 Changeset [16196] by julie
- sort templates by name not title in mymine
11/07/08:
- 17:40 Changeset [16195] by contrino
- modmine tiles: more renaming,still to clean
- 17:12 Changeset [16194] by julie
- only add to lists of the same type.
- 17:11 Changeset [16193] by contrino
- modmine tiles: some renaming, to be cleaned
- 17:06 Changeset [16192] by watkins
- Make sure that bag name is not empty before saving it
- 17:04 Changeset [16191] by rns
- Fixes for data category pages.
- 17:01 Changeset [16190] by jakub
- Minor fix - extra value parameter is displayed red.
- 16:51 Changeset [16189] by julie
- fixed object count when adding removing items from lists
- 16:21 Changeset [16188] by rns
- Removed PDB link until we can check attribute values.
- 16:16 Changeset [16187] by julie
- remove debug output
- 16:14 Changeset [16186] by julie
- set default constraint value on template form when autocompleter is …
- 15:26 Changeset [16185] by kmr
- Fixed NullPointerException? in SequenceExporter? for BioEntitys? that have …
- 14:57 Changeset [16184] by julie
- updated anopheles vectorbase dataset's url
- 14:36 Changeset [16183] by julie
- updated location of image in tour
- 14:03 Changeset [16181] by kmr
- Don't set DataSet?.dataSource when reading fasta, set it in datasets.xml
- 13:35 ListWebService edited by jakub
- (diff)
- 13:35 TemplateWebService edited by jakub
- (diff)
- 13:35 QueryWebService edited by jakub
- (diff)
- 13:34 WebService edited by jakub
- (diff)
- 13:19 Changeset [16180] by jakub
- Change of QueryService? and TemplateService? API.
- 12:57 Changeset [16179] by rns
- Corrected BDGP logo link, refs #1002.
- 12:35 Changeset [16178] by rns
- Corrected case of attribute link, refs #1758.
- 12:31 Changeset [16177] by jakub
- Fixed: show description checkbox is checked after pressing reset button.
- 12:02 Changeset [16176] by kmr
- Warning fixes.
- 11:50 Changeset [16175] by rns
- Added AnatomyTerm? and MRNAExpressionTerm to autocompletion.
- 10:58 Changeset [16174] by rns
- Corrected bag -> list on MyMine? page.
- 10:39 Changeset [16173] by dg353
- fixed IE explorer bug
- 10:29 Changeset [16172] by contrino
- modmine: added first menu tile for modencode, prepared other 2. some …
- 10:27 Changeset [16171] by dg353
- changed highlighting color
- 09:37 Changeset [16170] by julie
- shorten p-value to four digits
- 09:27 Changeset [16169] by julie
- shorten p-value to 5 digits.
10/07/08:
- 18:37 Changeset [16168] by jakub
- Fixed navigation problem: when user went back from web service link page, …
- 18:30 Changeset [16167] by kmr
- Fixed NCBIFastaLoaderTaskTest.
- 17:05 Changeset [16166] by julie
- checkstyle
- 17:05 Changeset [16165] by julie
- don't require users to login to view query history page in mymine. Refs …
- 16:40 Changeset [16164] by julie
- eclipse warnings
- 16:40 Changeset [16163] by julie
- Correctly remove selected records after user 'selects all'. Refs #1115
- 15:56 WebConfigModel edited by julie
- (diff)
- 15:54 WebConfigModel edited by julie
- (diff)
- 15:51 Tagging edited by julie
- (diff)
- 15:39 WebApp edited by julie
- (diff)
- 15:38 WebConfigModel edited by julie
- (diff)
- 15:38 WebConfigModel edited by julie
- (diff)
- 15:37 WebConfigModel edited by julie
- (diff)
- 14:54 Changeset [16162] by jakub
- Show description fix.
- 14:27 Changeset [16161] by jakub
- Show description fix.
- 13:42 Changeset [16160] by kmr
- Fixed GFF3ConverterTest.
- 13:28 Changeset [16159] by kmr
- Add icon to BDGP link.
- 13:10 WebConfigModel edited by julie
- (diff)
- 12:58 Changeset [16158] by rns
- Added more fields for FlyMine autocompletion.
- 12:50 Widgets edited by julie
- (diff)
- 12:49 Widgets edited by julie
- (diff)
- 12:27 Changeset [16157] by jakub
- Added test.
- 12:27 Changeset [16156] by jakub
- Changed log4j config, only error messages reported.
- 12:25 Changeset [16155] by rns
- Add postprocess target for autocompletion.
- 12:25 Changeset [16154] by jakub
- Fix enforced by webservice client.
- 12:24 Changeset [16153] by jakub
- Unused method removed.
- 12:24 Changeset [16152] by jakub
- Javadoc reformated.
- 12:11 Widgets edited by julie
- (diff)
- 12:10 Changeset [16151] by kmr
- Configure priority for LocatedSequenceFeature?.chromosomeLocation for …
- 12:09 Changeset [16150] by kmr
- Fixed FastaLoaderTaskTest?, FlyBaseCDSFastaLoaderTaskTest …
- 11:36 Changeset [16149] by julie
- region test fix
- 11:34 Changeset [16148] by julie
- disease region test fix
- 11:33 Changeset [16147] by julie
- flyreg test fix
- 11:30 Changeset [16146] by julie
- always show 7 digits in enrichment widgets
- 10:40 Changeset [16144] by kmr
- Fixed whitespace.
- 10:34 Changeset [16143] by kmr
- Better log message.
- 10:31 Changeset [16142] by kmr
- Fixed paths.
- 10:30 Changeset [16141] by kmr
- Fixed missing golden_path_region features.
09/07/08:
- 17:44 Changeset [16140] by kmr
- Change modmine model to use Date fields for experimentDate …
- 17:41 Changeset [16139] by kmr
- Fix TypeUtil?.stringToObject() to be able to convert date strings into …
- 17:34 WebConfigModel edited by julie
- (diff)
- 14:10 Changeset [16138] by julie
- remove source reference from MRNAExpressionResults. Refs #1778
- 14:04 Changeset [16137] by kmr
- Don't ignore golden_path_region and ultra_scaffold features.
- 13:17 WebappConf edited by julie
- (diff)
- 13:17 WebappConf edited by julie
- (diff)
- 13:17 WebappConf edited by julie
- (diff)
- 13:16 Changeset [16136] by jakub
- Minor changes and fixes.
- 13:15 LongDisplayers edited by julie
- (diff)
- 13:10 Changeset [16135] by jakub
- Added first version of webservice client samples
- 13:09 LongDisplayers edited by julie
- 13:09 WebConfigModel edited by julie
- (diff)
- 13:05 WebConfigModel edited by julie
- 12:54 Tagging edited by julie
- (diff)
- 12:35 WebappConf edited by julie
- (diff)
- 12:35 WebappConf edited by julie
- (diff)
- 12:06 Changeset [16134] by kmr
- Fix for reading locations from matches - only look for matches. Refs …
- 12:00 Changeset [16133] by kmr
- Added logo for links to BDGP. Refs #1002.
- 11:53 WebappRelease edited by julie
- (diff)
- 11:51 WebappRelease edited by julie
- (diff)
- 11:45 WebApp edited by julie
- (diff)
- 11:44 UserProfile edited by julie
- (diff)
- 11:36 WebApp edited by julie
- (diff)
- 11:29 WebApp edited by julie
- (diff)
- 11:18 WebApp edited by julie
- (diff)
- 11:02 Tagging edited by julie
- 11:01 WebApp edited by julie
- (diff)
- 10:53 WebappConf edited by julie
- (diff)
- 10:35 PrecomputedTables edited by julie
- (diff)
- 10:30 CustomiseWebapp edited by julie
- (diff)
- 10:28 CustomiseWebapp edited by julie
- (diff)
- 10:17 WebappConf edited by julie
- (diff)
- 10:15 Changeset [16132] by julie
- removed obsolete entry from malariamine's build.properties file
- 10:01 WebappConf edited by julie
- (diff)
- 09:49 WebappRelease edited by julie
- (diff)
- 09:41 WikiStart edited by julie
- (diff)
- 09:37 WebappConf edited by julie
- (diff)
08/07/08:
- 19:46 Changeset [16131] by jakub
- Added
- 19:10 Changeset [16130] by jakub
- Added doPost() method.
- 19:09 Changeset [16129] by jakub
- Added missing library.
- 19:09 Changeset [16128] by jakub
- Added useful method to unmarshal PathQuery?.
- 19:08 Changeset [16127] by jakub
- Added model service.
- 17:49 Changeset [16126] by kmr
- Read EST locations that are stored as matches in chado.
- 16:43 Changeset [16125] by kmr
- Warning fixes.
- 16:39 Changeset [16124] by kmr
- Check for null connection before closing.
- 16:09 DataCategories edited by julie
- (diff)
- 15:52 Changeset [16123] by rns
- added autocomplte/summary fields for ProteinDomain?.
- 15:49 DataCategories edited by julie
- (diff)
- 15:45 WebApp edited by julie
- (diff)
- 15:45 Changeset [16122] by kmr
- When retry copy_db() more frequently in project_build.
- 15:45 IntegratedTemplateBuilder edited by julie
- (diff)
- 15:42 WebApp edited by julie
- (diff)
- 15:37 UserProfile edited by julie
- (diff)
- 15:29 Changeset [16121] by julie
- add extra field to export. Refs #1720
- 15:03 Changeset [16120] by julie
- formatting fix
- 13:06 Changeset [16119] by julie
- removed unused dataset. All go annotation datasets look like: "Go …
- 12:46 Changeset [16118] by julie
- remove obsolete datasets
- 12:44 Changeset [16117] by julie
- add datasets to genes created for BDGP. Refs #1777, #1772
- 12:43 Changeset [16116] by kmr
- Fixed syntax error.
- 12:42 Changeset [16115] by kmr
- Set reference from DataSet? to DataSource? in FastaLoaderTask?.
- 12:31 Changeset [16114] by kmr
- Set the dataSourceName for all fasta sources.
- 12:25 Changeset [16113] by julie
- add method and link to enrichment widgets. Refs #1764
- 12:22 Changeset [16112] by kmr
- Code tidying.
- 12:21 Changeset [16111] by kmr
- Throw an exception if FastaLoaderTask?.dataSetTitle is not set.
- 12:18 Changeset [16110] by kmr
- Throw an exception if FastaLoaderTask? tries to create a DataSource? without …
- 12:12 Changeset [16109] by kmr
- Added missing dataset titles for gene fasta. Refs #1761.
- 11:55 EnrichmentWidgets edited by julie
- 11:44 WebApp edited by julie
- (diff)
- 11:08 Changeset [16108] by kmr
- Fix MirandaConverterTest?.
- 11:02 Changeset [16107] by kmr
- Fix LongOligoGFF3RecordHandlerTest.
- 11:01 Changeset [16106] by kmr
- Add datasets to chromosomes in GFF3Converter. Refs #1772.
- 10:32 Changeset [16105] by julie
- updated dataset in fly-Fish url generation
- 10:08 Changeset [16104] by julie
- fixed classpath, eclipse warning
- 10:07 Changeset [16103] by julie
- remove duplicate dataset
07/07/08:
- 17:13 Changeset [16102] by rns
- Added GOTerm/GOAnnotation fields for autocompletion.
- 17:09 Changeset [16101] by rns
- removed temporary bag queries added for release 13.0.
- 16:57 Changeset [16100] by rns
- UniProt? uses FlyBaseIdResolver? for Dpse genes as well as Dmel.
- 16:08 Changeset [16099] by julie
- fixed classpath, don't printout test items file
- 15:57 Changeset [16098] by julie
- gff3 converter test fix
- 15:27 Changeset [16097] by julie
- fixed test
- 15:04 Changeset [16096] by julie
- added flyfish's URL
- 15:00 Changeset [16095] by julie
- updated flyfish widget with new dataset name
- 14:51 Changeset [16094] by julie
- updated datasets.xml to match Ensembl converter
- 14:24 Changeset [16093] by rns
- Added GLEANRsymbol as a class key
- 13:49 Changeset [16092] by rns
- Remove Dpse from InParanoid? config
- 13:26 Changeset [16091] by kmr
- FlyBaseDBConverter is now GenomeDBConverter and works for WormBase? …
- 13:25 Changeset [16090] by kmr
- FastaLoaderTask?.getDataSet() is now public.
- 12:53 Changeset [16089] by watkins
- Fixed missing organsim for gene and updated test
- 12:29 Changeset [16088] by kmr
- Added objectstore summary properties for Gene.flyBaseFeatureType for …
- 12:28 Changeset [16087] by kmr
- Added objectstore summary properties for Gene.flyBaseFeatureType for …
- 12:22 Changeset [16086] by kmr
- Fixed missing datasets for FlyBase? UTRs.
- 12:20 Changeset [16085] by kmr
- Fixed data set titles for modmine.
- 12:19 Changeset [16084] by rns
- Fixed profile webap test.
- 12:05 Changeset [16083] by contrino
- modmine: minor webapp changes
- 11:55 Changeset [16082] by julie
- miranda test fix
- 11:28 Changeset [16081] by julie
- flyreg test fix. added to datasets.xml file.
- 11:21 Changeset [16080] by kmr
- Fixed Eclipse warnings.
- 10:47 Changeset [16079] by kmr
- Eclipse warning fix.
- 09:53 Changeset [16078] by julie
- test updates for gff3 handlers
- 09:40 Changeset [16077] by julie
- updated to new datasource name in anoph identifiers test, fixed classpath
- 09:37 Changeset [16076] by julie
- changed Sanger datasource to Sanger Institute, updated test and classpath
06/07/08:
- 11:46 Changeset [16075] by rns
- Removed duplicate VectorBase? DataSet?.
- 10:16 Changeset [16074] by rns
- fixed datasets XML file format.
05/07/08:
- 11:45 Changeset [16071] by rns
- Fixed DataSet? name.
04/07/08:
- 17:46 Changeset [16070] by julie
- target files updated to match changes in [16065]
- 17:45 Changeset [16069] by rns
- Update GO converter to use IdResolver? for FlyBase? Dmel genes.
- 17:37 Changeset [16068] by watkins
- Fixed Miranda test
- 17:10 Changeset [16067] by watkins
- fixed DataSets?
- 17:01 Changeset [16066] by kmr
- Changed chado test to test that alleles get publications. Refs #1759.
- 17:01 Changeset [16065] by julie
- updated datasets to new, spiffier names
- 16:56 Changeset [16064] by kmr
- Fixed path with a collection configured in webconfig.
- 16:56 Changeset [16063] by kmr
- Fixed to match [16061].
- 16:34 Changeset [16062] by kmr
- Set the publications collection for all objects from chado not just Genes. …
- 16:15 Changeset [16061] by hilde
- corrected some
- 16:12 Changeset [16060] by kmr
- Removed dead tile.
- 16:00 Changeset [16059] by julie
- add datasets collection to feature for gff3converter. I'm thinking this …
- 15:35 Changeset [16058] by rns
- updated FlyBase? fasta version.
- 15:23 Changeset [16057] by julie
- anoest test fix
- 15:10 Changeset [16056] by julie
- improve anoph dataset title even more.
- 15:07 Changeset [16055] by watkins
- Updated miranda properties
- 15:05 Changeset [16054] by julie
- improve anoph dataset title
- 15:03 Changeset [16053] by watkins
- MiRNATarget is now a LocatedSequenceFeature? and uses GFF3Convertor
- 14:59 Changeset [16052] by julie
- pubmed gene converter test fix
- 14:40 Changeset [16051] by julie
- add datasets to estclusters Refs #1772
- 13:48 Changeset [16050] by julie
- add datasets to all bioentities in affy converter. Refs #1772
- 13:39 Changeset [16049] by julie
- create genes with good flybase id instead of potentially outdated id. …
- 13:33 Changeset [16048] by julie
- psi converter fix. Refs #1773
- 13:11 Changeset [16047] by julie
- fixed kegg's datasource
- 12:57 Changeset [16046] by julie
- pubmed script fix. Refs #1775
- 12:11 Changeset [16045] by rns
- Temporary code to redo broken list uprgade from release 12.0 to release …
- 12:09 Changeset [16044] by rns
- Copied list upgrade fix from branch.
- 11:50 Changeset [16043] by rns
- Fix the list upgrade to ignore objects in the target database that have …
03/07/08:
- 16:56 Changeset [16042] by contrino
- modmine meta: some clean-up
- 15:36 Changeset [16041] by julie
- add test for dmel and flybaseId resolver to pubmed-gene. Refs #1729
- 15:20 Changeset [16040] by julie
- javadoc
- 15:06 Changeset [16039] by julie
- add new package to classpath
- 14:59 Changeset [16038] by contrino
- modmine meta: added submissionDataAttribute to store name/value/type of …
- 14:29 Changeset [16037] by julie
- check that field has an autocompleter before trying to resolve. this …
- 12:09 Changeset [16036] by julie
- revert [16024]
- 10:59 Changeset [16035] by watkins
- Fixed path to website root
- 10:40 Changeset [16034] by jakub
- Remove unused builder to fix build error in Eclipse.
02/07/08:
- 17:13 Changeset [16033] by julie
- move idresolver so that mock idresolver can be used in the test. Refs …
- 16:30 Changeset [16031] by watkins
- Fixed setView
- 16:02 2007/12/07/12.08 edited by kmr
- (diff)
- 16:00 2008/06/10/11.58 edited by kmr
- (diff)
- 15:55 2008/06/10/11.58 edited by kmr
- (diff)
- 15:54 2008/06/10/11.58 edited by kmr
- 15:52 2007/12/07/12.08 edited by kmr
- (diff)
- 15:37 Changeset [16030] by kmr
- Don't create DataSource? with no title when loading fasta. Refs #1761.
- 15:09 Changeset [16029] by watkins
- Merged widgetws branch back into the trunk
- 15:05 Changeset [16028] by kmr
- Better error message.
- 12:16 Changeset [16027] by julie
- use boolean instead of string for direction. replace optimised method
- 11:54 Changeset [16026] by julie
- new test for PathQuery. incomplete. the view and order by methods are …
- 11:43 Changeset [16025] by julie
- more documentation. handle the querybuilder's stupid requirements more …
01/07/08:
- 17:11 Changeset [16024] by julie
- validate sort order on import. update import to accept new syntax for …
- 15:09 Changeset [16023] by julie
- automatically update the order by clause if a node is removed
- 15:08 Changeset [16022] by julie
- use only add the first path (not all paths) to the sort order on xml …
- 14:05 Changeset [16021] by julie
- remove obsolete method
- 11:32 Changeset [16020] by julie
- allow spaces around commas in lists of strings being added to the view
- 11:32 Changeset [16019] by julie
- removed debug output, sp fixes
- 10:36 Changeset [16018] by julie
- add datasets collection to protein and protein structures. Refs #1751
- 10:20 Changeset [16017] by julie
- removed obsolete datasources. these sources come from the flymine-static …
30/06/08:
- 17:11 Changeset [16016] by julie
- another sp fix
- 16:53 Changeset [16015] by julie
- changed Pfam static datasource name so object merges with InterPro
- 16:43 Changeset [16014] by julie
- sp fixes
- 15:49 Changeset [16013] by contrino
- modmine meta: added affiliation to provider static source.
- 15:49 Changeset [16012] by julie
- don't set datasource name to lowercase as they don't merge
- 13:57 Changeset [16011] by julie
- added dataset to gene. Refs #1751
- 13:46 Changeset [16010] by jakub
- PathQuery? and junit fixes.
- 13:11 Changeset [16009] by julie
- added datasets to genes. Refs #1729, #1751
- 12:44 Changeset [16008] by julie
- replace deprecated method
- 11:58 Changeset [16007] by julie
- set dataset for genes. Refs #1751
- 11:58 Changeset [16006] by julie
- eclipse warnings
- 11:07 Changeset [16005] by julie
- set datasets collection for proteins. Refs #1751, #1450
27/06/08:
- 17:09 Changeset [16004] by julie
- accept comma-delimited list of paths for the view list with spaces around …
- 16:59 Changeset [16003] by julie
- rm debug output
- 16:58 Changeset [16002] by julie
- fixed checkstyle, iterator bug
- 15:38 Changeset [16001] by julie
- Create gene with FBgn instead of CG. Parse 'Target Description' column to …
- 15:26 Changeset [16000] by contrino
- modmine meta: added class OriginOfReplication? for origin replication …
- 14:01 Changeset [15999] by mnw21
- Partial fix to results table with collection outer joins. Xavier to fix it …
- 13:59 Changeset [15998] by mnw21
- Fix various results problems. Will backport resultsTable.jsp to trunk for …
- 13:49 Changeset [15997] by julie
- add extraValue to xml output. test BETWEEN constraint
- 13:44 Changeset [15996] by julie
- new test for constraints
- 10:30 Changeset [15995] by hilde
- corrected mutagens inline table
- 10:15 Changeset [15994] by julie
- update problems list on template update form if template is valid. Fixes …
26/06/08:
- 17:11 Changeset [15993] by julie
- new methods for api to update views and sort order
- 15:18 Changeset [15992] by julie
- renamed PathQuery?.setView() to setViewPaths(). setView will be the method …
- 15:03 Changeset [15991] by julie
- new api methods to add constraint
- 14:21 Changeset [15990] by watkins
- merged back trunk from r:1950
- 13:34 Changeset [15989] by mnw21
- Need to switch to trunk
- 13:17 Changeset [15988] by jakub
- Fixed Eclipse classpath problem and fixed generating …
- 11:53 Changeset [15987] by jakub
- Fix of eclipse project build.
- 11:48 Changeset [15986] by jakub
- Fixed build and configuration classes for Eclipse project.
- 11:05 Changeset [15985] by dg353
- fixed bugs for autocompleter
- 10:40 Changeset [15984] by jakub
- Separating pathquery to separate project.
- 09:59 Changeset [15983] by julie
- eclipse warning, test fix
- 09:31 Changeset [15982] by julie
- dump more often
- 09:23 Changeset [15981] by julie
- add new salivary gland tissue
25/06/08:
- 17:49 Changeset [15980] by mnw21
- Changes from previous branch
- 14:26 Changeset [15979] by contrino
- modmine meta: added ext link to EST (ncbi). Note: - image for link is poor …
- 14:12 Changeset [15978] by mnw21
- Bring branch up to date with trunk
- 14:08 Changeset [15977] by mnw21
- MainHelper? possibly finished
- 13:38 Changeset [15976] by jakub
- Refactoring. ANTLR classes are generated to different package. Removed …
- 12:32 Changeset [15975] by julie
- fixed biogrid test, updated spelling of dataset
- 12:25 Changeset [15974] by jakub
- Removed unneeded path query checking.
- 12:05 Changeset [15973] by jakub
- Refactoring. Checking of pathquery removed from unmarshalling. Must be …
- 11:41 Changeset [15972] by julie
- copied [15971] to trunk
- 11:27 Changeset [15971] by watkins
- Datasets instead of Dataset for AnalysisResults? and ComputationalResults?
- 11:12 Changeset [15970] by julie
- update location of constraint class
- 11:01 Changeset [15969] by julie
- fix datasource reference
- 11:01 Changeset [15968] by julie
- move constraints
- 10:48 Changeset [15967] by julie
- removed duplicate arrayexpress datasource
24/06/08:
- 17:30 Changeset [15966] by jakub
- Refactored methods from MainHelper? to the Model and Util classes in …
- 16:30 Changeset [15965] by contrino
- template table display: corrected hover help and bold title
- 16:02 Changeset [15964] by jakub
- Removed file that shouldn't be checked in.
- 15:59 Changeset [15963] by jakub
- First from refactoring steps to create separate project for pathquery api. …
- 15:38 Changeset [15962] by contrino
- modmine meta: some configuration adjustments
- 15:37 Changeset [15961] by julie
- make the autocompleter optional
- 14:52 Changeset [15960] by julie
- let user set constraint label
- 14:51 Changeset [15959] by julie
- checkstyle
- 13:53 Changeset [15958] by julie
- dump less often
- 13:27 Changeset [15957] by jakub
- Try to remove testing of webservice.
- 11:51 Changeset [15956] by julie
- constraints class for the new PathQuery API
- 11:36 Changeset [15955] by jakub
- Old web service removed to make space for new webservice client.
- 11:16 Changeset [15954] by watkins
- Created a webservice allowing users to get widgets for given identifiers
- 11:11 Changeset [15953] by watkins
- Branch for widget webservice
- 11:11 Changeset [15952] by watkins
- Created directory for Xav's branches
- 10:42 Changeset [15951] by julie
- method signatures and javadoc for the new PathQuery API
23/06/08:
- 17:12 Changeset [15950] by julie
- updated pfam name so interpro and go datasource objects will merge
- 17:10 Changeset [15949] by julie
- updated PDB datasource so all of them will merge
- 14:17 Changeset [15948] by julie
- fixed keys for anoph-expr and bdgp clones, checkstyle, fixed case for …
- 13:52 Changeset [15947] by julie
- corrected spelling of Affymetrix dataset
- 13:32 Changeset [15946] by julie
- documentation fix
- 13:32 Changeset [15945] by julie
- updated biogrid's dataset
- 12:55 Changeset [15944] by julie
- updated widgets with newly refactored datasets model
- 12:54 Changeset [15943] by julie
- fixed eclipse warnings
- 12:54 Changeset [15942] by julie
- set dmel pages to higher google priority
- 12:53 Changeset [15941] by julie
- fixed typo in default queries config
- 12:53 Changeset [15940] by julie
- fixed typo in publications enrichment widget
- 12:15 Changeset [15939] by contrino
- modmine meta: some webapp configurations
- 11:30 Changeset [15938] by julie
- update priority for google
- 11:13 Changeset [15937] by julie
- checkstyle. don't pass the model to table widgets.
- 09:39 Changeset [15936] by julie
- update computational result to have datasets collection instead of …
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