Changeset 22715

Timestamp:

03/09/10 17:13:17 (17 months ago)

Author:

contrino

Message:

modmine meta: added reads counts to submission

Location:

trunk

Files:

• bio/sources/chado-db/main/src/org/intermine/bio/dataconversion/ModEncodeMetaDataProcessor.java (modified) (1 diff)
• modmine/dbmodel/resources/modencode-metadata_additions.xml (modified) (1 diff)

trunk/bio/sources/chado-db/main/src/org/intermine/bio/dataconversion/ModEncodeMetaDataProcessor.java

@@ -3230 +3230 @@
         FIELD_NAME_MAP.put("Data Type", "category");
         FIELD_NAME_MAP.put("Assay Type", "experimentType");
+        FIELD_NAME_MAP.put("Total Read Count", "totalReadCount");
+        FIELD_NAME_MAP.put("Multiply Mapped Read Count", "multiplyMappedReadCount");
+        FIELD_NAME_MAP.put("Uniquely Mapped Read Count", "uniquelyMappedReadCount");
 
         // data: parameter values

trunk/modmine/dbmodel/resources/modencode-metadata_additions.xml

@@ -253 +253 @@
   <attribute name="DCCid" type="java.lang.Integer" />
   <attribute name="experimentType" type="java.lang.String" />
+  <attribute name="totalReadCount" type="java.lang.Integer" />
+  <attribute name="multiplyMappedReadCount" type="java.lang.Integer" />
+  <attribute name="uniquelyMappedReadCount" type="java.lang.Integer" /> 
+  
   <reference name="organism" referenced-type="Organism" />
   <reference name="publication" referenced-type="Publication"/>