Changeset 20744
- Timestamp:
- 27/02/10 12:16:43 (6 months ago)
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trunk/flymine/webapp/resources/webapp/dataCategories.jsp
r20431 r20744 33 33 <p> Genomics </p></html:link></td> 34 34 <td> <i>Drosophila</i> </td> 35 <td> Genome annotation for D. melanogaster (R5.2 3), D. ananassae (R1.3), D. erecta (R1.3), D. grimshawi (R1.3), D. mojavensis (R1.3), D. persimilis (R1.3), D. pseudoobscura (R2.6), D. sechellia (R1.3), D. simulans (R1.3), D. virilis (R1.2), D. willistoni (R1.3) and D. yakuba (R1.3).</td>36 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>35 <td> Genome annotation for D. melanogaster (R5.25), D. ananassae (R1.3), D. erecta (R1.3), D. grimshawi (R1.3), D. mojavensis (R1.3), D. persimilis (R1.3), D. pseudoobscura (R2.8), D. sechellia (R1.3), D. simulans (R1.3), D. virilis (R1.2), D. willistoni (R1.3) and D. yakuba (R1.3).</td> 36 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 37 37 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233" target="_new">PubMed: 17099233</a></td> 38 38 <td> <html:link action="/dataCategories" anchor="note1" title="${note1}">#1</html:link></td> … … 76 76 <td><i>Drosophila</i></td> 77 77 <td>Orthologues and paralogues between the 12 <i>Drosophila</i> genomes.</td> 78 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>78 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 79 79 <td>Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233 " target="_new">PubMed: 17099233</a></td> 80 80 <td> </td> … … 104 104 <td> <i>D. melanogaster</i> </td> 105 105 <td> Protein annotation</td> 106 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 15.1 2</td>106 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 15.14</td> 107 107 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17142230" target="_new">PubMed: 17142230</a></td> 108 108 <td> </td> … … 112 112 <td> <i>A. gambiae</i></td> 113 113 <td> Protein annotation</td> 114 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.1 2</td>114 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.14</td> 115 115 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17142230" target="_new">PubMed: 17142230</a></td> 116 116 <td> </td> … … 120 120 <td> <i>C. elegans</i> </td> 121 121 <td> Protein annotation</td> 122 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.1 2</td>122 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.14</td> 123 123 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17142230" target="_new">PubMed: 17142230</a></td> 124 124 <td> </td> … … 128 128 <td> <i>H. sapiens</i></td> 129 129 <td> Protein annotation</td> 130 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.1 2</td>130 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.14</td> 131 131 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17142230">PubMed: 17142230</a></td> 132 132 <td> </td> … … 136 136 <td> <i>M. musculus</i></td> 137 137 <td> Protein annotation</td> 138 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.1 2</td>138 <td> <a href="http://www.uniprot.org" target="_new">UniProt</a> - Release 15.14</td> 139 139 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17142230" target="_new">PubMed: 17142230</a></td> 140 140 <td> </td> … … 144 144 <td> <i>D. melanogaster</i></td> 145 145 <td> Protein family and domain assignments to proteins</td> 146 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.1 2)</td>146 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.14)</td> 147 147 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17202162" target="_new">PubMed: 17202162</a></td> 148 148 <td> </td> … … 152 152 <td> <i>A. gambiae</i></td> 153 153 <td> Protein family and domain assignments to proteins</td> 154 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.1 2)</td>154 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.14)</td> 155 155 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17202162" target="_new">PubMed: 17202162</a></td> 156 156 <td> </td> … … 160 160 <td> <i>C. elegans</i> </td> 161 161 <td> Protein family and domain assignments to proteins</td> 162 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.1 2)</td>162 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from UniProt Release 15.14)</td> 163 163 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17202162" target="_new">PubMed: 17202162</a></td> 164 164 <td> </td> … … 201 201 <td> <i>D. melanogaster</i> </td> 202 202 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 203 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 2nd December 2009</td>203 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 17 February 2010</td> 204 204 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17145710" target="_new">PubMed:17145710</a></td> 205 205 <td> </td> … … 209 209 <td> <i>C. elegans</i></td> 210 210 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 211 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 2nd December 2009</td>211 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 17 February 2010</td> 212 212 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17145710" target="_new">PubMed:17145710</a></td> 213 213 <td> </td> … … 217 217 <td> <i>S. cerevisiae</i></td> 218 218 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 219 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 2nd December 2009</td>219 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 17 February 2010</td> 220 220 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17145710" target="_new">PubMed:17145710</a></td> 221 221 <td> </td> … … 260 260 <td> <i>D. melanogaster</i> </td> 261 261 <td> GO annotations </td> 262 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 2 0th November 2009</td>262 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 22 January 2010</td> 263 263 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new">PubMed:10802651</a></td> 264 264 <td> </td> … … 268 268 <td> <i>C. elegans</i></td> 269 269 <td> GO annotations </td> 270 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 1st December 2009</td>270 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 8 February 2010</td> 271 271 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new">PubMed:10802651</a></td> 272 272 <td> </td> … … 276 276 <td> <i>M. musculus</i></td> 277 277 <td> GO annotations </td> 278 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 11th December 2009</td>278 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 20 Febrary 2010</td> 279 279 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new">PubMed:10802651</a></td> 280 280 <td> </td> … … 284 284 <td> <i>S. cerevisiae</i></td> 285 285 <td> GO annotations </td> 286 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 1 2th December 2009</td>286 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 14 February 2010</td> 287 287 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new">PubMed:10802651</a></td> 288 288 <td> </td> … … 292 292 <td> <i>S. pombe</i></td> 293 293 <td> GO annotations </td> 294 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 22nd November 2009</td>294 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 13 February 2010</td> 295 295 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new">PubMed:10802651</a></td> 296 296 <td> </td> … … 300 300 <td> <i>A. gambiae</i> </td> 301 301 <td> GO annotations </td> 302 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">UniProt GOA</a> - 13th December 2009</td>302 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">UniProt GOA</a> - 22 January 2010</td> 303 303 <td> Camon et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/14681408" target="_new">PubMed: 14681408</a></td> 304 304 <td> </td> … … 320 320 <td> <i>D. melanogaster</i> </td> 321 321 <td> Affymetrix microarray-based atlas of gene expression in larval and adult tissues</td> 322 <td> <a href="http://www.flyatlas.org" target="_new">FlyAtlas</a> - 13th December 2009</td>322 <td> <a href="http://www.flyatlas.org" target="_new">FlyAtlas</a> - 20 February 2010</td> 323 323 <td> Chintapalli et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17534367" target="_new">PubMed: 17534367</a></td> 324 324 <td> </td> … … 371 371 <td> <i>D. melanogaster</i> </td> 372 372 <td> Enhancers</td> 373 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>373 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 374 374 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233" target="_new">PubMed: 17099233</a></td> 375 375 <td> </td> … … 390 390 <td> <i>D. melanogaster</i> </td> 391 391 <td> Alleles and phenotypes</td> 392 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>392 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 393 393 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233" target="_new">PubMed: 17099233</a></td> 394 394 <td> </td> … … 417 417 <td> <i>D. melanogaster</i>, <i>C. elegans</i>, <i>S. cerevisiae</i></td> 418 418 <td> Curated pathway information and the genes involved in them</td> 419 <td> <a href="http://www.genome.jp/kegg/" target="_new">KEGG</a> - Release 5 2.1, 12th December, 2009</td>419 <td> <a href="http://www.genome.jp/kegg/" target="_new">KEGG</a> - Release 53, 17 February 2010</td> 420 420 <td> Kanehisa et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/16381885" target="_new">PubMed: 16381885</a></td> 421 421 <td> </td> … … 425 425 <td> <i>D. melanogaster</i>, <i>C. elegans</i>, <i>S. cerevisiae</i> </td> 426 426 <td> Pathway information and the genes involved in them, inferred through orthologues from Human curated pathways</td> 427 <td> <a href="http://www.reactome.org/" target="_new">Reactome</a> - Version 31, 15 thDecember 2009</td>427 <td> <a href="http://www.reactome.org/" target="_new">Reactome</a> - Version 31, 15 December 2009</td> 428 428 <td> </td> 429 429 <td> </td> … … 457 457 <td> <i>D. melanogaster</i> </td> 458 458 <td> <a href="http://www.drosdel.org.uk" target="_new">DrosDel</a> artificial deletions</td> 459 <td> <a href="http://www.flybase.org" target="_new">FlyBase </a> - Version FB20 09_10</td>459 <td> <a href="http://www.flybase.org" target="_new">FlyBase </a> - Version FB2010_02</td> 460 460 <td> Ryder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/15238529" target="_new">PubMed: 15238529</a></td> 461 461 <td> </td> … … 465 465 <td> <i>D. melanogaster</i> </td> 466 466 <td> Insertions (including DrosDel and Exelixis) </td> 467 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>467 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 468 468 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233" target="_new">PubMed: 17099233</a></td> 469 469 <td> </td> … … 508 508 <td> <i>Drosophila</i> </td> 509 509 <td> Gene versus publications</td> 510 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB20 09_10</td>510 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2010_02</td> 511 511 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17099233" target="_new">PubMed: 17099233</a></td> 512 512 <td> </td> … … 515 515 <td> <i>D. melanogaster</i> </td> 516 516 <td> Gene versus publications</td> 517 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 12th December 2009</td>517 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 20 February 2010</td> 518 518 <td> </td> 519 519 <td> </td> … … 523 523 <td> <i>C. elegans</i></td> 524 524 <td> Gene versus publications</td> 525 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 12th December 2009</td>525 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 20 February 2010</td> 526 526 <td> </td> 527 527 <td> </td> … … 531 531 <td> <i>S. cerevisiae</i> </td> 532 532 <td> Gene versus publications</td> 533 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 12th December 2009</td>533 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 20 February 2010</td> 534 534 <td> </td> 535 535 <td> </td>
