Changeset 20735


Ignore:
Timestamp:
26/02/10 10:25:25 (2 years ago)
Author:
julie
Message:

test fix

Location:
trunk/bio/sources/treefam
Files:
2 edited

Legend:

Unmodified
Added
Removed

  • trunk/bio/sources/treefam/.classpath

    r19243 r20735  
    1111    <classpathentry kind="lib" path="test/resources"/> 
    1212    <classpathentry kind="lib" path="main/resources"/> 
     13    <classpathentry combineaccessrules="false" kind="src" path="/bio-testall-dbmodel"/> 
    1314    <classpathentry kind="output" path="bin"/> 
    1415</classpath> 

  • trunk/bio/sources/treefam/test/resources/TreefamConverterTest_tgt.xml

    r20468 r20735  
    22<item id="3_1" class="Organism"> 
    33<attribute name="taxonId" value="7227"/> 
     4</item> 
     5<item id="7_1" class="OrthologueEvidence"> 
     6<reference name="evidenceCode" ref_id="6_1"/> 
    47</item> 
    58<item id="4_2" class="Synonym"> 
    … …  
    912<collection name="dataSets"><reference ref_id="1_1"/></collection> 
    1013</item> 
    11 <item id="7_2" class="Homologue"> 
     14<item id="2_1" class="Gene"> 
     15<attribute name="primaryIdentifier" value="FBgn001"/> 
     16<reference name="organism" ref_id="3_1"/> 
     17<collection name="dataSets"><reference ref_id="1_1"/></collection> 
     18</item> 
     19<item id="5_2" class="Homologue"> 
    1220<attribute name="bootstrapScore" value="100"/> 
    1321<attribute name="type" value="paralogue"/> 
    … …  
    1523<reference name="homologue" ref_id="2_1"/> 
    1624<collection name="dataSets"><reference ref_id="1_1"/></collection> 
    17 <collection name="evidence"><reference ref_id="6_1"/></collection> 
    18 </item> 
    19 <item id="2_1" class="Gene"> 
    20 <attribute name="primaryIdentifier" value="FBgn001"/> 
    21 <reference name="organism" ref_id="3_1"/> 
    22 <collection name="dataSets"><reference ref_id="1_1"/></collection> 
    23 </item> 
    24 <item id="6_1" class="OrthologueEvidence"> 
    25 <reference name="evidenceCode" ref_id="5_1"/> 
     25<collection name="evidence"><reference ref_id="7_1"/></collection> 
    2626</item> 
    2727<item id="1_1" class="DataSet"> 
    … …  
    3838<attribute name="name" value="TreeFam"/> 
    3939</item> 
    40 <item id="7_1" class="Homologue"> 
     40<item id="2_2" class="Gene"> 
     41<attribute name="primaryIdentifier" value="FBgn002"/> 
     42<reference name="organism" ref_id="3_1"/> 
     43<collection name="dataSets"><reference ref_id="1_1"/></collection> 
     44</item> 
     45<item id="6_1" class="OrthologueEvidenceCode"> 
     46<attribute name="abbreviation" value="AA"/> 
     47<attribute name="name" value="Amino acid sequence comparison"/> 
     48</item> 
     49<item id="5_1" class="Homologue"> 
    4150<attribute name="bootstrapScore" value="100"/> 
    4251<attribute name="type" value="paralogue"/> 
    … …  
    4453<reference name="homologue" ref_id="2_2"/> 
    4554<collection name="dataSets"><reference ref_id="1_1"/></collection> 
    46 <collection name="evidence"><reference ref_id="6_1"/></collection> 
    47 </item> 
    48 <item id="2_2" class="Gene"> 
    49 <attribute name="primaryIdentifier" value="FBgn002"/> 
    50 <reference name="organism" ref_id="3_1"/> 
    51 <collection name="dataSets"><reference ref_id="1_1"/></collection> 
    52 </item> 
    53 <item id="5_1" class="OrthologueEvidenceCode"> 
    54 <attribute name="abbreviation" value="AA"/> 
    55 <attribute name="name" value="Amino acid sequence comparison"/> 
     55<collection name="evidence"><reference ref_id="7_1"/></collection> 
    5656</item> 
    5757</items> 
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