Changeset 16553

Show
Ignore:
Timestamp:
21/08/08 11:12:34 (5 months ago)
Author:
hilde
Message:

updated

Files:

Legend:

Unmodified
Added
Removed
Modified
Copied
Moved

  • trunk/flymine/webapp/resources/webapp/model/GO.jsp

    r16550 r16553  
    5555      of experimental or other support. The codes are listed below. For more 
    5656      information, go to <a href="http://www.geneontology.org/GO.evidence.shtml" target="_new">Guide to GO Evidence Codes</a>. </p> 
    57       <p> EXP = Inferred from Experiment </p>  
    58       <p> IDA = Inferred from Direct Assay </p>  
    59       <p> IPI = Inferred from Physical Interaction </p>  
    60       <p> IMP = Inferred from Mutant Phenotype </p>  
    61       <p> IGI = Inferred from Genetic Interaction </p>  
    62       <p> IEP = Inferred from Expression Pattern </p>  
    63       <p> ISS = Inferred from Sequence or Structural Similarity </p>  
    64       <p> ISO = Inferred from Sequence Orthology </p>  
    65       <p> ISA = Inferred from Sequence Alignment </p>  
    66       <p> ISM = Inferred from Sequence Model </p>  
    67       <p> IGC = Inferred from Genomic Context </p>  
    68       <p> RCA = inferred from Reviewed Computational Analysis </p>  
    69       <p> TAS = Traceable Author Statement </p>  
    70       <p> NAS = Non-traceable Author Statement </p>  
    71       <p> IC = Inferred by Curator </p>  
    72       <p> ND = No biological Data available </p>  
    73       <p> IE = Inferred from Electronic Annotation </p>  
    74       <p> NR = Not Recorded </p>  
    75  
     57    <p> EXP = Inferred from Experiment </p>  
     58    <p> IDA = Inferred from Direct Assay </p>  
     59    <p> IPI = Inferred from Physical Interaction </p>  
     60    <p> IMP = Inferred from Mutant Phenotype </p>  
     61    <p> IGI = Inferred from Genetic Interaction </p>  
     62    <p> IEP = Inferred from Expression Pattern </p>  
     63    <p> ISS = Inferred from Sequence or Structural Similarity </p>  
     64    <p> ISO = Inferred from Sequence Orthology </p>  
     65    <p> ISA = Inferred from Sequence Alignment </p>  
     66    <p> ISM = Inferred from Sequence Model </p>  
     67    <p> IGC = Inferred from Genomic Context </p>  
     68    <p> RCA = inferred from Reviewed Computational Analysis </p>  
     69    <p> TAS = Traceable Author Statement </p>  
     70    <p> NAS = Non-traceable Author Statement </p>  
     71    <p> IC = Inferred by Curator </p>  
     72    <p> ND = No biological Data available </p>  
     73    <p> IEA = Inferred from Electronic Annotation </p>  
     74    <p> NR = Not Recorded </p>  
    7675     <br/> 
    7776    </div> 

  • trunk/flymine/webapp/resources/webapp/model/genomics.jsp

    r16550 r16553  
    3636         <li> 
    3737            <dt> 
    38               <i>Drosophila</i> - Genome annotation for D. melanogaster (R5.5), D. ananassae (R1.0), D. erecta (R1.0), D. grimshawi (R1.0), D. mojavensis (R1.0), D. persimilis (R1.0), D. pseudoobscura pseudoobscura (R2.1), D. sechellia (R1.0), D. simulans (R1.0), D. virilis (R1.0), D. willistoni (R1.0) and D. yakuba (R1.0) from <a href="http://www.flybase.org" target="_new">. Only mapped genes are loaded for D. melanogaster. 
    39                 <html:img src="model/images/FlyBase_logo_mini.png" title="Click here to view FlyBase's website"/></a>. 
     38              <i>Drosophila</i> - Genome annotation for D. melanogaster (R5.5), D. ananassae (R1.0), D. erecta (R1.0), D. grimshawi (R1.0), D. mojavensis (R1.0), D. persimilis (R1.0), D. pseudoobscura pseudoobscura (R2.1), D. sechellia (R1.0), D. simulans (R1.0), D. virilis (R1.0), D. willistoni (R1.0) and D. yakuba (R1.0) from <a href="http://www.flybase.org" target="_new"> 
     39                <html:img src="model/images/FlyBase_logo_mini.png" title="Click here to view FlyBase's website"/></a>. Only mapped genes are loaded for D. melanogaster. 
    4040            </dt></li> 
    4141        <li> 
    …… 
    142142          </li> 
    143143 
    144           <li> 
    145             <im:querylink text="All <i>Apis mellifera</i> gene identifiers and chromosomal positions " skipBuilder="true"> 
    146 <query name="" model="genomic" view="Gene.primaryIdentifier Gene.chromosome.primaryIdentifier Gene.chromosomeLocation.start Gene.chromosomeLocation.end" sortOrder="Gene.primaryIdentifier asc"> 
    147   <node path="Gene" type="Gene"> 
    148   </node> 
    149   <node path="Gene.organism" type="Organism"> 
    150   </node> 
    151   <node path="Gene.organism.name" type="String"> 
    152     <constraint op="=" value="Apis mellifera" description="" identifier="" code="A"> 
    153     </constraint> 
    154   </node> 
    155 </query> 
    156             </im:querylink> 
    157           </li> 
    158  
     144       
    159145          <li> 
    160146            <im:querylink text="All <i>Anopheles gambiae</i> EST clusters from Imperial College" skipBuilder="true"> 
    …… 
    177163            </im:querylink> 
    178164          </li> 
     165 
     166    <li> 
     167            <im:querylink text="All <i>Apis mellifera</i> gene identifiers and chromosomal positions " skipBuilder="true"> 
     168<query name="" model="genomic" view="Gene.primaryIdentifier Gene.chromosome.primaryIdentifier Gene.chromosomeLocation.start Gene.chromosomeLocation.end" sortOrder="Gene.primaryIdentifier asc"> 
     169  <node path="Gene" type="Gene"> 
     170  </node> 
     171  <node path="Gene.organism" type="Organism"> 
     172  </node> 
     173  <node path="Gene.organism.name" type="String"> 
     174    <constraint op="=" value="Apis mellifera" description="" identifier="" code="A"> 
     175    </constraint> 
     176  </node> 
     177</query> 
     178            </im:querylink> 
     179          </li> 
     180 
     181 
    179182        </ul> 
    180183      </div> 

  • trunk/flymine/webapp/resources/webapp/model/proteinInteraction.jsp

    r16550 r16553  
    2020        <div id="hiddenDiv1" class="dataSetDescription"> 
    2121           
    22           <dl>    
    23             <dt>Protein interactions have been loaded for <i>D. melanogaster</i>, <i>C. elegans</i> and <i>S. cerevisiae</i> from <a href="http://www.ebi.ac.uk/intact/" target="_new">IntAct</a>.</dt> 
    24  
    25 <br/>  
    26  
    27             <dt> 
    28               Genetic and protein interaction data for <i>D. melanogaster</i>, <i>C. elegans</i> and <i>S. cerevisiae</i> have been loaded from the <a href="http://www.thebiogrid.org/" target="_new">BioGrid</a>. These data include both high-throughput studies and conventional focussed studies and have been curated from the literature. </dt> 
    29           </dl> 
     22          <ul><li><dt>Protein interactions have been loaded for <i>D. melanogaster</i>, <i>C. elegans</i> and <i>S. cerevisiae</i> from <a href="http://www.ebi.ac.uk/intact/" target="_new">IntAct</a>.</dt></li></ul> 
     23 
     24          <ul><li><dt>Genetic and protein interaction data for <i>D. melanogaster</i>, <i>C. elegans</i> and <i>S. cerevisiae</i> have been loaded from the <a href="http://www.thebiogrid.org/" target="_new">BioGrid</a>. These data include both high-throughput studies and conventional focussed studies and have been curated from the literature.</dt></li></ul> 
     25 
    3026        </div> 
    3127 
    3228        <h4> 
    33           <a href="javascript:toggleDiv('hiddenDiv3');"> 
     29          <a href="javascript:toggleDiv('hiddenDiv2');"> 
    3430            <img id='hiddenDiv2Toggle' src="images/disclosed.gif"/> 
    3531            <i> D. melanogaster </i> miRNA targets ... 
    …… 
    3935 
    4036        <div id="hiddenDiv2" class="dataSetDescription"> 
    41           <dl> 
    42             <dt>miRNA target predictions for <i>D. melanogaster</i> miRNAs from <a href="http://microrna.sanger.ac.uk/targets/v4/" target="_new">miRBase</a>. The miRanda algorithm was used to scan all available miRNA sequences for a given genome against 3' UTR sequences of that genome. Each predicted target has a score and a p-value. The algorithm and its results have been published: Enright et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=14709173" target="_new">PubMed:14709173</a>. 
    43             </dt> 
    44           </dl> 
     37 
     38          <ul><li><dt>miRNA target predictions for <i>D. melanogaster</i> miRNAs from <a href="http://microrna.sanger.ac.uk/targets/v4/" target="_new">miRBase</a>. The miRanda algorithm was used to scan all available miRNA sequences for a given genome against 3' UTR sequences of that genome. Each predicted target has a score and a p-value. The algorithm and its results have been published: Enright et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=14709173" target="_new">PubMed:14709173</a>.</dt></li></ul> 
     39 
    4540        </div> 
    4641 
    …… 
    5651          <li> 
    5752            <im:querylink text="All <i>D. melanogaster</i> interactions from BioGRID " skipBuilder="true"> 
    58 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     53<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    5954  <node path="Interaction" type="Interaction"> 
    6055  </node> 
    …… 
    8176   <li> 
    8277            <im:querylink text="All <i>C. elegans</i> interactions from BioGRID " skipBuilder="true"> 
    83 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     78<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    8479  <node path="Interaction" type="Interaction"> 
    8580  </node> 
    …… 
    107102   <li> 
    108103            <im:querylink text="All <i>S. cerevisiae</i> interactions from BioGRID " skipBuilder="true"> 
    109 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     104<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    110105  <node path="Interaction" type="Interaction"> 
    111106  </node> 
    …… 
    133128   <li> 
    134129            <im:querylink text="All <i>D. melanogaster</i> interactions from IntAct " skipBuilder="true"> 
    135 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     130<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.experiment.interactionDetectionMethod.name Interaction.experiment.participantIdentificationMethod.name Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    136131  <node path="Interaction" type="Interaction"> 
    137132  </node> 
    …… 
    159154   <li> 
    160155            <im:querylink text="All <i>C. elegans</i> interactions from IntAct " skipBuilder="true"> 
    161 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     156<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.experiment.interactionDetectionMethod.name Interaction.experiment.participantIdentificationMethod.name Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    162157  <node path="Interaction" type="Interaction"> 
    163158  </node> 
    …… 
    185180   <li> 
    186181            <im:querylink text="All <i>S. cerevisiae</i> interactions from BioGRID " skipBuilder="true"> 
    187 <query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.gene.primaryIdentifier Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
     182<query name="" model="genomic" view="Interaction.experiment.publication.pubMedId Interaction.experiment.name Interaction.experiment.interactionDetectionMethod.name Interaction.experiment.participantIdentificationMethod.name Interaction.gene.primaryIdentifier Interaction.role Interaction.interactingGenes.primaryIdentifier Interaction.type.name" sortOrder="Interaction.experiment.publication.pubMedId asc" constraintLogic="A and B"> 
    188183  <node path="Interaction" type="Interaction"> 
    189184  </node> 

  • trunk/flymine/webapp/resources/webapp/model/proteinStructure.jsp

    r15563 r16553  
    5757          <li> 
    5858            <im:querylink text="All 3-D protein structure data (Kenji Mizuguchi and PDB data) " skipBuilder="true"> 
    59   <query name="" model="genomic" view="Protein.organism.name Protein.primaryAccession Protein.name Protein.structures.identifier Protein.structures.evidence.title" sortOrder="Protein.organism.name Protein.primaryAccession Protein.name Protein.structures.identifier Protein.structures.evidence.title"> 
     59<query name="" model="genomic" view="Protein.organism.name Protein.primaryAccession Protein.name Protein.structures.identifier Protein.structures.dataSets.title" sortOrder="Protein.organism.name asc Protein.primaryAccession asc Protein.name asc Protein.structures.identifier asc"> 
    6060  <node path="Protein" type="Protein"> 
    6161  </node> 
    6262  <node path="Protein.structures" type="ProteinStructure"> 
    63   </node> 
    64   <node path="Protein.structures.evidence" type="DataSet"> 
    6563  </node> 
    6664</query> 
    …… 
    7068          <li> 
    7169            <im:querylink text="All 3-D protein structure data for <i>A. gambiae</i> (Kenji Mizuguchi data) " skipBuilder="true"> 
    72 <query name="kenji_anopheles" model="genomic" view="Protein.primaryIdentifier Protein.primaryAccession Protein.structures.identifier Protein.structures.start Protein.structures.end Protein.structures.prosa_q_score Protein.structures.prosa_z_score Protein.structures.evidence.title" sortOrder="Protein.primaryIdentifier asc" constraintLogic="A and B"> 
     70<query name="" model="genomic" view="Protein.primaryIdentifier Protein.primaryAccession Protein.structures.identifier Protein.structures.start Protein.structures.end" sortOrder="Protein.primaryIdentifier asc" constraintLogic="A and B"> 
    7371  <node path="Protein" type="Protein"> 
    7472  </node> 
    7573  <node path="Protein.structures" type="ProteinStructure"> 
    7674  </node> 
    77   <node path="Protein.structures.evidence" type="DataSet"> 
     75  <node path="Protein.structures.dataSets" type="DataSet"> 
    7876  </node> 
    79   <node path="Protein.structures.evidence.title" type="String"> 
    80     <constraint op="CONTAINS" value="Kenji" description="" identifier="" code="A"> 
     77  <node path="Protein.structures.dataSets.title" type="String"> 
     78    <constraint op="=" value="Mizuguchi protein structure predictions" description="" identifier="" code="A"> 
    8179    </constraint> 
    8280  </node> 
    …… 
    9189          <li> 
    9290            <im:querylink text="All 3-D protein structure data for <i>D. melanogaster</i> (Kenji Mizuguchi data) " skipBuilder="true"> 
    93 <query name="" model="genomic" view="Protein.primaryIdentifier Protein.primaryAccession Protein.structures.identifier Protein.structures.start Protein.structures.end Protein.structures.prosa_q_score Protein.structures.prosa_z_score Protein.structures.evidence.title" sortOrder="Protein.primaryIdentifier asc" constraintLogic="A and B"> 
     91<query name="" model="genomic" view="Protein.primaryIdentifier Protein.primaryAccession Protein.structures.identifier Protein.structures.start Protein.structures.end" sortOrder="Protein.primaryIdentifier asc" constraintLogic="A and B"> 
    9492  <node path="Protein" type="Protein"> 
    9593  </node> 
    9694  <node path="Protein.structures" type="ProteinStructure"> 
    9795  </node> 
    98   <node path="Protein.structures.evidence" type="DataSet"> 
     96  <node path="Protein.structures.dataSets" type="DataSet"> 
    9997  </node> 
    100   <node path="Protein.structures.evidence.title" type="String"> 
    101     <constraint op="CONTAINS" value="Kenji" description="" identifier="" code="A"> 
     98  <node path="Protein.structures.dataSets.title" type="String"> 
     99    <constraint op="=" value="Mizuguchi protein structure predictions" description="" identifier="" code="A"> 
    102100    </constraint> 
    103101  </node> 
    …… 
    117115  <node path="Protein.structures" type="ProteinStructure"> 
    118116  </node> 
    119   <node path="Protein.structures.evidence" type="DataSet"> 
     117  <node path="Protein.structures.dataSets" type="DataSet"> 
    120118  </node> 
    121   <node path="Protein.structures.evidence.title" type="String"> 
    122     <constraint op="CONTAINS" value="PDB" description="" identifier="" code="A" extraValue=""> 
     119  <node path="Protein.structures.dataSets.title" type="String"> 
     120    <constraint op="=" value="PDB dmel data set" description="" identifier="" code="A"> 
    123121    </constraint> 
    124122  </node> 

  • trunk/flymine/webapp/resources/webapp/model/resources.jsp

    r15616 r16553  
    5656          <div id="hiddenDiv2" class="dataSetDescription"> 
    5757        <p> 
     58 
    5859          <dt> Probe sets from the <a href="http://www.affymetrix.com/" target="_new">Affymetrix</a> GeneChip <i>Drosophila</i> Genome 1.0 and 2.0 Arrays, a 
    59            microarray tool for studying expression of <i>D. melanogaster</i> transcripts.The 1.0 array set comprises probe sets interrogating more than 13,500 <i>D. melanogaster</i> genes. Sequences used in the design of this array were selected from FlyBase version 1.0.  The 2.0 array set comprises 18,880 probe sets for the analysis  
    60            of over 18,500 transcripts. Sequences used in the design of this GeneChip were selected from Flybase version 3.1.</dt> 
     60           microarray tool for studying expression of <i>D. melanogaster</i> transcripts. Probeset locations and mapped genes (not transcripts) are downloaded from Ensembl. FlyMine only loads probesets that match to at least one gene. For more information on the probeset mappings, go to <a href="http://www.ensembl.org/Homo_sapiens/helpview?kw=microarray;ref=http%3A%2F%2Fwww.ensembl.org%2FMus_musculus%2Findex.html/" target="_new">Ensembl help</a>.  </dt> 
    6161        </br></p> 
    6262 
    …… 
    216216        <li> 
    217217            <im:querylink text="All <i>D. melanogaster</i> transposon insertions (including Exelixis and DrosDel)" skipBuilder="true"> 
    218 <query name="" model="genomic" view="TransposableElementInsertionSite.primaryIdentifier TransposableElementInsertionSite.name TransposableElementInsertionSite.cytoLocation " sortOrder="TransposableElementInsertionSite.primaryIdentifier asc"> 
     218<query name="" model="genomic" view="TransposableElementInsertionSite.primaryIdentifier TransposableElementInsertionSite.secondaryIdentifier" sortOrder="TransposableElementInsertionSite.primaryIdentifier asc"> 
     219  <node path="TransposableElementInsertionSite" type="TransposableElementInsertionSite"> 
     220  </node> 
     221  <node path="TransposableElementInsertionSite.organism" type="Organism"> 
     222  </node> 
     223  <node path="TransposableElementInsertionSite.organism.shortName" type="String"> 
     224    <constraint op="=" value="D. melanogaster" description="" identifier="" code="A"> 
     225    </constraint> 
     226  </node> 
     227</query> 
     228          </im:querylink> 
     229          </li> 
     230 
     231          <li> 
     232      <im:querylink text="All mapped <i>D. melanogaster</i> transposon insertions (including Exelixis and DrosDel)" skipBuilder="true"> 
     233<query name="" model="genomic" view="TransposableElementInsertionSite.primaryIdentifier TransposableElementInsertionSite.secondaryIdentifier TransposableElementInsertionSite.chromosome.primaryIdentifier TransposableElementInsertionSite.chromosomeLocation.start TransposableElementInsertionSite.chromosomeLocation.end TransposableElementInsertionSite.cytoLocation" sortOrder="TransposableElementInsertionSite.primaryIdentifier asc"> 
    219234  <node path="TransposableElementInsertionSite" type="TransposableElementInsertionSite"> 
    220235  </node> 
    …… 
    229244          </li> 
    230245 
    231           <li> 
    232       <im:querylink text="All mapped <i>D. melanogaster</i> transposon insertions (including Exelixis and DrosDel)" skipBuilder="true"> 
    233 <query name="" model="genomic" view="TransposableElementInsertionSite.primaryIdentifier TransposableElementInsertionSite.name TransposableElementInsertionSite.cytoLocation TransposableElementInsertionSite.chromosome.primaryIdentifier TransposableElementInsertionSite.chromosomeLocation.start TransposableElementInsertionSite.chromosomeLocation.end" sortOrder="TransposableElementInsertionSite.primaryIdentifier asc"> 
    234   <node path="TransposableElementInsertionSite" type="TransposableElementInsertionSite"> 
    235   </node> 
    236   <node path="TransposableElementInsertionSite.organism" type="Organism"> 
    237   </node> 
    238   <node path="TransposableElementInsertionSite.organism.name" type="String"> 
    239     <constraint op="=" value="Drosophila melanogaster" description="" identifier="" code="A"> 
    240     </constraint> 
    241   </node> 
    242 </query> 
    243           </im:querylink> 
    244           </li> 
    245  
    246246 
    247247           <li> 
    248              <im:querylink text="All Affymetrix probes from the GeneChip <i>Drosophila</i> Genome Array " skipBuilder="true"> 
    249 <query name="" model="genomic" view="ProbeSet.primaryIdentifier" sortOrder="ProbeSet.primaryIdentifier asc"> 
     248             <im:querylink text="Affymetrix probesets from the GeneChip <i>Drosophila</i> Genome Array with their locations" skipBuilder="true"> 
     249<query name="" model="genomic" view="ProbeSet.primaryIdentifier ProbeSet.locations.object.primaryIdentifier ProbeSet.locations.start ProbeSet.locations.end" sortOrder="ProbeSet.primaryIdentifier asc"> 
    250250  <node path="ProbeSet" type="ProbeSet"> 
    251251  </node> 
    252   <node path="ProbeSet.evidence" type="DataSet"> 
    253   </node> 
    254   <node path="ProbeSet.evidence.title" type="String"> 
    255     <constraint op="=" value="Affymetrix array: Drosophila Genome Array" description="" identifier="" code="A" extraValue=""> 
     252  <node path="ProbeSet.dataSets" type="DataSet"> 
     253  </node> 
     254  <node path="ProbeSet.dataSets.title" type="String"> 
     255    <constraint op="=" value="Affymetrix array: DrosGenome1" description="" identifier="" code="A"> 
    256256    </constraint> 
    257257  </node> 
    …… 
    260260          </li> 
    261261 
    262           <li>             
    263              <im:querylink text="All Affymetrix probes from the GeneChip <i>Drosophila</i> 2 Array " skipBuilder="true"> 
    264 <query name="" model="genomic" view="ProbeSet.primaryIdentifier" sortOrder="ProbeSet.primaryIdentifier asc"> 
     262          <li> 
     263             <im:querylink text="Affymetrix probesets from the GeneChip <i>Drosophila</i> Genome Array with the genes they map to" skipBuilder="true"> 
     264<query name="" model="genomic" view="ProbeSet.primaryIdentifier ProbeSet.genes.primaryIdentifier ProbeSet.genes.symbol" sortOrder="ProbeSet.primaryIdentifier asc"> 
    265265  <node path="ProbeSet" type="ProbeSet"> 
    266266  </node> 
    267   <node path="ProbeSet.evidence" type="DataSet"> 
    268   </node> 
    269   <node path="ProbeSet.evidence.title" type="String"> 
    270     <constraint op="=" value="Affymetrix array: Drosophila\\_2 Array" description="" identifier="" code="A" extraValue=""> 
     267  <node path="ProbeSet.dataSets" type="DataSet"> 
     268  </node> 
     269  <node path="ProbeSet.dataSets.title" type="String"> 
     270    <constraint op="=" value="Affymetrix array: DrosGenome1" description="" identifier="" code="A"> 
    271271    </constraint> 
    272272  </node> 
    …… 
    275275            </li> 
    276276 
     277          <li>             
     278             <im:querylink text="Affymetrix probesets from the GeneChip <i>Drosophila</i> 2 Array with their locations" skipBuilder="true"> 
     279<query name="" model="genomic" view="ProbeSet.primaryIdentifier ProbeSet.locations.object.primaryIdentifier ProbeSet.locations.start ProbeSet.locations.end" sortOrder="ProbeSet.primaryIdentifier asc"> 
     280  <node path="ProbeSet" type="ProbeSet"> 
     281  </node> 
     282  <node path="ProbeSet.dataSets" type="DataSet"> 
     283  </node> 
     284  <node path="ProbeSet.dataSets.title" type="String"> 
     285    <constraint op="=" value="Affymetrix array: Drosophila\\_2" description="" identifier="" code="A"> 
     286    </constraint> 
     287  </node> 
     288</query> 
     289             </im:querylink> 
     290            </li> 
     291 
     292     <li>             
     293             <im:querylink text="Affymetrix probesets from the GeneChip <i>Drosophila</i> 2 Array with the genes they map to" skipBuilder="true"> 
     294<query name="" model="genomic" view="ProbeSet.primaryIdentifier ProbeSet.genes.primaryIdentifier ProbeSet.genes.symbol" sortOrder="ProbeSet.primaryIdentifier asc"> 
     295  <node path="ProbeSet" type="ProbeSet"> 
     296  </node> 
     297  <node path="ProbeSet.dataSets" type="DataSet"> 
     298  </node> 
     299  <node path="ProbeSet.dataSets.title" type="String"> 
     300    <constraint op="=" value="Affymetrix array: Drosophila\\_2" description="" identifier="" code="A"> 
     301    </constraint> 
     302  </node> 
     303</query> 
     304             </im:querylink> 
     305            </li> 
    277306 
    278307          <li>