Changeset 16280
- Timestamp:
- 23/07/08 16:54:04 (1 month ago)
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trunk/flymine/webapp/resources/webapp/dataCategories.jsp
r15884 r16280 36 36 <td> <i>Drosophila</i> </td> 37 37 <td> Genome annotation for D. melanogaster (R5.5), D. ananassae (R1.0), D. erecta (R1.0), D. grimshawi (R1.0), D. mojavensis (R1.0), D. persimilis (R1.0), D. pseudoobscura pseudoobscura (R2.1), D. sechellia (R1.0), D. simulans (R1.0), D. virilis (R1.0), D. willistoni (R1.0) and D. yakuba (R1.0).</td> 38 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_0 5</td>38 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_06</td> 39 39 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099233" target="_new">PubMed: 17099233</a></td> 40 40 <td> <html:link action="/dataCategories" anchor="note1" title="${note1}">#1</html:link></td> … … 79 79 <td> <a href="http://inparanoid.sbc.su.se/" target="_new">InParanoid</a> - Version 6.1</td> 80 80 <td> O'Brien et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=15608241" target="_new">PubMed: 15608241</a></td> 81 <td><html:link action="/dataCategories" anchor="note2" title="${note2}">#2</html:link></td> 81 <td><html:link action="/dataCategories" anchor="note2" title="${note2}">#2</html:link></td> 82 82 </tr> 83 83 … … 98 98 <td> <i>D. melanogaster</i> </td> 99 99 <td> Protein annotation</td> 100 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13. 4</td>100 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13.6</td> 101 101 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17142230" target="_new">PubMed: 17142230</a></td> 102 102 <td> </td> … … 106 106 <td> <i>A. gambiae</i></td> 107 107 <td> Protein annotation</td> 108 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13. 4</td>108 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13.6</td> 109 109 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17142230" target="_new">PubMed: 17142230</a></td> 110 110 <td> </td> … … 122 122 <td> <i>H. sapiens</i></td> 123 123 <td> Protein annotation</td> 124 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13. 4</td>124 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13.6</td> 125 125 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17142230">PubMed: 17142230</a></td> 126 126 <td> </td> … … 130 130 <td> <i>M. musculus</i></td> 131 131 <td> Protein annotation</td> 132 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13. 4</td>132 <td> <a href="http://www.ebi.uniprot.org/index.shtml" target="_new">UniProt</a> - Release 13.6</td> 133 133 <td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17142230" target="_new">PubMed: 17142230</a></td> 134 134 <td> </td> … … 138 138 <td> <i>D. melanogaster</i></td> 139 139 <td> Protein family and domain assignments to proteins</td> 140 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13. 4)</td>140 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13.6)</td> 141 141 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17202162" target="_new">PubMed: 17202162</a></td> 142 142 <td> </td> … … 146 146 <td> <i>A. gambiae</i></td> 147 147 <td> Protein family and domain assignments to proteins</td> 148 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13. 4)</td>148 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13.6)</td> 149 149 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17202162" target="_new">PubMed: 17202162</a></td> 150 150 <td> </td> … … 154 154 <td> <i>C. elegans</i> </td> 155 155 <td> Protein family and domain assignments to proteins</td> 156 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13. 4)</td>156 <td> <a href="http://www.ebi.ac.uk/interpro" target="_new">InterPro</a> (from Uniprot release 13.6)</td> 157 157 <td> Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17202162" target="_new">PubMed: 17202162</a></td> 158 158 <td> </td> … … 195 195 <td> <i>D. melanogaster</i> </td> 196 196 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 197 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 27th May2008</td>197 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 30th June 2008</td> 198 198 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17145710" target="_new">PubMed:17145710</a></td> 199 199 <td> </td> … … 203 203 <td> <i>C. elegans</i></td> 204 204 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 205 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 27th May2008</td>205 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 30th June 2008</td> 206 206 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17145710" target="_new">PubMed:17145710</a></td> 207 207 <td> </td> … … 211 211 <td> <i>S. cerevisiae</i></td> 212 212 <td> High-throughput yeast 2-hybrid protein interaction datasets </td> 213 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 27th May2008</td>213 <td> <a href="http://www.ebi.ac.uk/intact" target="_new">IntAct</a> - 30th June 2008</td> 214 214 <td> Kerrien et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17145710" target="_new">PubMed:17145710</a></td> 215 215 <td> </td> … … 218 218 <td> <i>D. melanogaster</i></td> 219 219 <td> Genetic interactions from the BioGRID</td> 220 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.4 0</td>220 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.42 </td> 221 221 <td> Stark et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=16381927" target="_new">PubMed:16381927</a></td> 222 222 <td> </td> … … 226 226 <td> <i>C. elegans</i></td> 227 227 <td> Genetic interactions from the BioGRID</td> 228 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.4 0</td>228 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.42 </td> 229 229 <td> Stark et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=16381927" target="_new">PubMed:16381927</a></td> 230 230 <td> </td> … … 234 234 <td> <i>S. cerevisiae</i></td> 235 235 <td> Genetic interactions from the BioGRID</td> 236 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.4 0</td>236 <td> <a href="http://www.thebiogrid.org/" target="_new">BioGRID</a> - Version 2.0.42 </td> 237 237 <td> Stark et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=16381927" target="_new">PubMed:16381927</a></td> 238 238 <td> </td> … … 256 256 <td> GO annotations </td> 257 257 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology 258 Site</a> - 11th May2008</td>258 Site</a> - 29th June 2008</td> 259 259 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= 10802651" target="_new">PubMed:10802651</a></td> 260 260 <td> </td> … … 264 264 <td> <i>C. elegans</i></td> 265 265 <td> GO annotations </td> 266 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 11th May2008</td>266 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 29th June 2008</td> 267 267 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= 10802651" target="_new">PubMed:10802651</a></td> 268 268 <td> </td> … … 272 272 <td> <i>M. musculus</i></td> 273 273 <td> GO annotations </td> 274 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 2 4th May2008</td>274 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 29th June 2008</td> 275 275 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= 10802651" target="_new">PubMed:10802651</a></td> 276 276 <td> </td> … … 280 280 <td> <i>S. cerevisiae</i></td> 281 281 <td> GO annotations </td> 282 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 2 5th May2008</td>282 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 29th June 2008</td> 283 283 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= 10802651" target="_new">PubMed:10802651</a></td> 284 284 <td> </td> … … 288 288 <td> <i>S. pombe</i></td> 289 289 <td> GO annotations </td> 290 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 15th May 2008</td>290 <td> <a href="http://www.geneontology.org" target="_new">Gene Ontology Site</a> - 3rd July 2008</td> 291 291 <td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= 10802651" target="_new">PubMed:10802651</a></td> 292 292 <td> </td> … … 296 296 <td> <i>A. gambiae</i> </td> 297 297 <td> GO annotations </td> 298 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">Uniprot GOA</a> - 23rd May 2008</td>298 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">Uniprot GOA</a> - 4th July 2008</td> 299 299 <td> Camon et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=14681408" target="_new">PubMed: 14681408</a></td> 300 300 <td> </td> … … 304 304 <td> <i>A. mellifera</i> </td> 305 305 <td> GO annotations </td> 306 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">Uniprot GOA</a> - 23rd May 2008</td>306 <td> <a href="http://www.ebi.ac.uk/GOA/uniprot_release.html" target="_new">Uniprot GOA</a> - 4th July 2008</td> 307 307 <td> Camon et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=14681408" target="_new">PubMed: 14681408</a></td> 308 308 <td> </td> … … 325 325 <td> <i>D. melanogaster</i> </td> 326 326 <td> Affymetrix microarray-based atlas of gene expression in larval and adult tissues</td> 327 <td> <a href="http://www.flyatlas.org" target="_new">FlyAtlas</a> - 16th November 2007</td>327 <td> <a href="http://www.flyatlas.org" target="_new">FlyAtlas</a> - 25th June 2008 </td> 328 328 <td> Chintapalli et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17534367" target="_new">PubMed: 17534367</a></td> 329 329 <td> </td> … … 341 341 <td> <i>D. melanogaster</i> </td> 342 342 <td> Expression patterns of mRNAs during embryogenesis</td> 343 <td> <a href="http://www.fruitfly.org/cgi-bin/ex/insitu.pl/" target="_new">BDGP</a> - 13th February 2008 </td>343 <td> <a href="http://www.fruitfly.org/cgi-bin/ex/insitu.pl/" target="_new">BDGP</a> - 9th May 2008 </td> 344 344 <td> Tomancak et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17645804" target="_new">PubMed:17645804</a></td> 345 345 <td> </td> … … 362 362 <td> <a href="http://redfly.ccr.buffalo.edu/" target="_new">REDfly</a> - Version 2.1</td> 363 363 <td> Gallo et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=16303794" target="_new">PubMed: 16303794</a></td> 364 <td> </td> 364 <td> </td> 365 365 </tr> 366 366 … … 370 370 <td> <a href="http://www.flyreg.org/" target="_new">REDfly</a> - Version 2.1</td> 371 371 <td> Bergman et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=15572468" target="_new">PubMed: 15572468</a></td> 372 <td> </td> 372 <td> </td> 373 373 </tr> 374 374 … … 376 376 <td> <i>D. melanogaster</i> </td> 377 377 <td> Enhancers</td> 378 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_0 5</td>378 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_06</td> 379 379 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099233" target="_new">PubMed: 17099233</a></td> 380 380 <td> </td> … … 386 386 <td> <a href="http://servlet.sanger.ac.uk/tiffin/" target="_new">Tiffin</a> - 1.2</td> 387 387 <td> Down et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17238282" target="_new">PubMed: 17238282</a></td> 388 <td><html:link action="/dataCategories" anchor="note3" title="${note3}">#3</html:link></td> 388 <td><html:link action="/dataCategories" anchor="note3" title="${note3}">#3</html:link></td> 389 389 </tr> 390 390 … … 395 395 <td> <i>D. melanogaster</i> </td> 396 396 <td> Alleles and phenotypes</td> 397 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_0 5</td>397 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_06</td> 398 398 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099233" target="_new">PubMed: 17099233</a></td> 399 399 <td> </td> … … 411 411 <td> <i>C. elegans</i> </td> 412 412 <td> RNAi data from in vivo experiments</td> 413 <td> <a href="http://www.wormbase.org" target="_new">WormBase</a> - Release WS1 89</td>413 <td> <a href="http://www.wormbase.org" target="_new">WormBase</a> - Release WS192 </td> 414 414 <td> Bieri et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099234" target="_new">PubMed: 17099234</a></td> 415 415 <td> </td> … … 422 422 <td> <i>D. melanogaster</i></td> 423 423 <td> Pathway information and the genes involved in them</td> 424 <td> <a href="http://www.genome.jp/kegg/" target="_new">KEGG</a> - Release 4 6.0, 23rd May 2008</td>424 <td> <a href="http://www.genome.jp/kegg/" target="_new">KEGG</a> - Release 47.0, 1st July 2008</td> 425 425 <td> Kanehisa et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=16381885" target="_new">PubMed: 16381885</a></td> 426 426 <td> </td> … … 444 444 <td> <i>D. melanogaster</i> </td> 445 445 <td> <a href="http://www.drosdel.org.uk" target="_new">DrosDel</a> artificial deletions</td> 446 <td> <a href="http://www.flybase.org" target="_new">FlyBase </a> - Version FB2008_0 5</td>446 <td> <a href="http://www.flybase.org" target="_new">FlyBase </a> - Version FB2008_06</td> 447 447 <td> Ryder et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=15238529" target="_new">PubMed: 15238529</a></td> 448 <td> </td> 448 <td> </td> 449 449 </tr> 450 450 … … 452 452 <td> <i>D. melanogaster</i> </td> 453 453 <td> Insertions (including DrosDel and Exelixis) </td> 454 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_0 5</td>454 <td> <a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_06</td> 455 455 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099233" target="_new">PubMed: 17099233</a></td> 456 456 <td> </td> … … 462 462 <td> <a href="http://www.affymetrix.com/" target="_new">Affymetrix</a></td> 463 463 <td> </td> 464 <td> </td> 464 <td> </td> 465 465 </tr> 466 466 … … 470 470 <td> <a href="http://www.affymetrix.com/" target="_new">Affymetrix</a></td> 471 471 <td> </td> 472 <td> </td> 472 <td> </td> 473 473 </tr> 474 474 … … 478 478 <td> <a href="http://www.indac.net/" target="_new">International Drosophila Array Consortium</a></td> 479 479 <td> </td> 480 <td> </td> 480 <td> </td> 481 481 </tr> 482 482 … … 495 495 <td> <i>Drosophila</i> </td> 496 496 <td> Gene versus publications</td> 497 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_0 5</td>497 <td><a href="http://www.flybase.org" target="_new">Flybase</a> - Version FB2008_06</td> 498 498 <td> Crosby et al - <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=17099233" target="_new">PubMed: 17099233</a></td> 499 499 <td> </td> … … 502 502 <td> <i>D. melanogaster</i> </td> 503 503 <td> Gene versus publications</td> 504 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 27th May 2008</td>504 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 3rd July 2008</td> 505 505 <td> </td> 506 506 <td> </td> … … 510 510 <td> <i>C. elegans</i></td> 511 511 <td> Gene versus publications</td> 512 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 27th May 2008</td>512 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 3rd July 2008</td> 513 513 <td> </td> 514 514 <td> </td> … … 518 518 <td> <i>S. cerevisiae</i> </td> 519 519 <td> Gene versus publications</td> 520 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 27th May 2008</td>520 <td> <a href="http://www.ncbi.nlm.nih.gov" target="_new">NCBI</a> - 3rd July 2008</td> 521 521 <td> </td> 522 522 <td> </td> … … 527 527 <div class="body"> 528 528 <ol> 529 <li><a name="note1">${note1}</a></li>530 <li><a name="note2">${note2}</a></li>531 <li><a name="note3">${note3}</a></li>529 <li><a name="note1">${note1}</a></li> 530 <li><a name="note2">${note2}</a></li> 531 <li><a name="note3">${note3}</a></li> 532 532 </ol> 533 533 </div>
