Changeset 16272

Timestamp:

22/07/08 10:43:26 (1 month ago)

Author:

contrino

Message:

modmine tiles: added modencode aspect, some correction

Files:

• trunk/modmine/webapp/resources/tiles-defs-model.xml (modified) (1 diff)
• trunk/modmine/webapp/resources/webapp/WEB-INF/aspects.xml (modified) (2 diffs)
• trunk/modmine/webapp/resources/webapp/WEB-INF/webconfig-model.xml (modified) (1 diff)
• trunk/modmine/webapp/resources/webapp/dataCategories.jsp (modified) (2 diffs)
• trunk/modmine/webapp/resources/webapp/model/images/modENCODE.png (added)
• trunk/modmine/webapp/resources/webapp/model/images/modENCODE_150.png (added)
• trunk/modmine/webapp/resources/webapp/model/submissions.jsp (modified) (2 diffs)

trunk/modmine/webapp/resources/tiles-defs-model.xml

@@ +1 @@
+  <definition name="orthologueDisplayer.tile" path="/model/orthologueDisplayer.jsp" 
+    controllerUrl="/initOrthologueDisplayer.do"/>
+    
+  <definition name="attributeLinkDisplayer.tile" path="/model/attributeLinkDisplayer.jsp" 
+          controllerUrl="/initAttributeLinkDisplayer.do"/>
+
-<definition name="providers.tile" path="/model/providers.jsp" 
-        controllerUrl="/initProviders.do"/>

trunk/modmine/webapp/resources/webapp/WEB-INF/aspects.xml

@@ -1 +1 @@
-<aspects>
+  <aspect name="modENCODE">
+    <subtitle></subtitle>
+    <icon-image>model/images/modENCODE_s.png</icon-image>
+    <large-image>model/images/modENODE_s.png</large-image>
+    <intro-text>
+      The National Human Genome Research Institute (NHGRI) model organism ENCyclopedia Of DNA Elements 
+      (modENCODE) Project will try to identify all of the sequence-based functional elements in the 
+      Caenorhabditis elegans and Drosophila melanogaster genomes. 
+      The project is run as a Research Network. 
+    </intro-text>
+    <tile-name>model/projects.jsp</tile-name>
+    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
+    <aspect-source name="WormBase" url="http://www.wormbase.org/"/>
+  </aspect>
+
-  <aspect name="Genomics">
-    <subtitle>Genome annotation</subtitle>
@@ -69 +84 @@
-  </aspect>
-
-<!--
-  <aspect name="Transcriptional Regulation">
-    <subtitle>Regulatory regions and&lt;br/&gt;transcription factor binding sites</subtitle>
-    <icon-image>model/images/bindingSites.png</icon-image>
-    <large-image>model/images/bindingSites.png</large-image>
-    <intro-text>
-      Regulatory regions and transcription factor binding sites in &lt;i&gt;Drosophila melanogaster&lt;/i&gt; from FlyReg, REDfly, Tiffin and FlyBase.
-    </intro-text>
-    <tile-name>model/bindingSites.jsp</tile-name>
-    <aspect-source name="FlyReg" url="http://www.flyreg.org/"/>
-    <aspect-source name="REDfly" url="http://redfly.ccr.buffalo.edu/"/>
-    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
-    <aspect-source name="Tiffin" url="http://servlet.sanger.ac.uk/tiffin/"/>
-  </aspect>
-
-  <aspect name="RNAi">
-    <subtitle>RNA interference</subtitle>
-    <icon-image>model/images/rnai.png</icon-image>
-    <large-image>model/images/rnai.png</large-image>
-    <intro-text>
-     Results from cell-based RNAi interference experiments from the
-     &lt;i&gt;Drosophila&lt;/i&gt; RNAi screening center and from
-     &lt;i&gt;in vivo&lt;/i&gt; experiments in &lt;i&gt;Caenorhabditis
-     elegans&lt;/i&gt;.  By using orthologues, gene phenotypes in other
-     organisms can be inferred from the &lt;i&gt;C. elegans&lt;/i&gt;
-     RNAi experiments.
-    </intro-text>
-    <tile-name>model/RNAi.jsp</tile-name>
-    <aspect-source name="Drosophila&lt;/i&gt; RNAi Screening Center" url="http://www.flyrnai.org/"/>
-  </aspect>
--->
-    
-  <aspect name="Literature">

trunk/modmine/webapp/resources/webapp/WEB-INF/webconfig-model.xml

@@ -43 +43 @@
-      <fieldconfig fieldExpr="factorName"/>
-      <fieldconfig fieldExpr="factorType"/>
-     <fieldconfig fieldExpr="description" showInResults="false"/
+<!--     <fieldconfig fieldExpr="description" showInResults="false"/> --
-    </fields>
-  </class>

trunk/modmine/webapp/resources/webapp/dataCategories.jsp

@@ -22 +22 @@
-  </tr>
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-        <html:link action="/aspect?name=Genomics"> <p><img src="model/images/genomics.gif" /></p>
-        <p> Genomics </p></html:link></td>
@@ -31 +48 @@
-    <td> &nbsp;</td>
-  </tr>
-
+
+
+
+
+
+
+
-  <tr><td rowspan="1"  class="leftcol">
-        <html:link action="/aspect?name=Comparative%20Genomics">

trunk/modmine/webapp/resources/webapp/model/submissions.jsp

@@ -29 +29 @@
-</table>
-</div>
+
+dateStyle="short"
+
---%>
-
@@ -43 +46 @@
- ${item.value.title}
-    </html:link>
-    </td><td><fmt:formatDate value="${item.value.publicReleaseDate}" type="date" dateStyle="short"/>
-    </td>
+    
+    <td><fmt:formatDate value="${item.value.publicReleaseDate}" type="date" pattern="yyyy-MM-dd"/>
+    </td>
+    
-      </tr>
-    </c:if>