Changeset 16234

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Timestamp:
15/07/08 16:42:51 (1 month ago)
Author:
julie
Message:

add datasets to go terms

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  • trunk/bio/sources/go-annotation/main/src/org/intermine/bio/dataconversion/GoConverter.java

    r16233 r16234  
    680680            item = createItem("GOTerm"); 
    681681            item.setAttribute("identifier", identifier); 
     682            String datasetId = dataSource.getCollection("dataSets").getRefIds().get(0); 
     683            item.setCollection("dataSets", new ArrayList(Collections.singleton(datasetId))); 
    682684            goTerms.put(identifier, item); 
    683685            store(item); 
    684  
    685             Item synonym = newSynonym( 
    686                                       item.getIdentifier(), 
    687                                       "identifier", 
    688                                       identifier, 
    689                                       dataSource); 
     686            Item synonym = newSynonym(item.getIdentifier(), "identifier", identifier, dataSource); 
    690687            store(synonym); 
    691688 

  • trunk/bio/sources/interpro/main/src/org/intermine/bio/dataconversion/InterProConverter.java

    r16232 r16234  
    2525import org.intermine.xml.full.Item; 
    2626import org.intermine.xml.full.ItemHelper; 
    27 import org.intermine.xml.full.Reference; 
    2827import org.intermine.xml.full.ReferenceList; 
    2928import org.xml.sax.Attributes;