source: trunk/flymine/webapp/resources/webapp/WEB-INF/aspects.xml @ 26750

<aspects>
  <aspect name="Function">
    <subtitle>GO, Pathways, Diseases, Phenotype, Domains</subtitle>
    <intro-text>
        GO, Pathways, Diseases, Phenotype, Domains
    </intro-text>
    <tile-name>model/genes.jsp</tile-name>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Ensembl" url="http://www.ensembl.org/Anopheles_gambiae/"/>
  </aspect>

  <aspect name="Genes">
    <subtitle>Genome annotation</subtitle>
    <icon-image>model/images/genomics.gif</icon-image>
    <large-image>model/images/genomics.gif</large-image>
    <intro-text>
      The gene structure and other genome annotation in FlyMine are provided by
      a variety of source databases.  In most cases FlyMine includes
      all genome features that have chromosomal locations (e.g. genes and repeat regions).
    </intro-text>
    <tile-name>model/genes.jsp</tile-name>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Ensembl" url="http://metazoa.ensembl.org/Anopheles_gambiae/Info/Index"/>
  </aspect>

  <aspect name="Homology">
    <subtitle>Orthologues and paralogues</subtitle>
    <icon-image>model/images/comparativeGenomics.png</icon-image>
    <large-image>model/images/comparativeGenomics.png</large-image>
    <intro-text>
      Orthologues and Paralogues.
    </intro-text>
    <tile-name>model/homology.jsp</tile-name>
    <aspect-source name="KEGG" url="http://www.genome.jp/kegg/ko.html"/>
    <aspect-source name="Treefam" url="http://www.treefam.org"/>
  </aspect>

  <aspect name="Expression">
    <subtitle></subtitle>
    <icon-image>model/images/embryos.jpg</icon-image>
    <large-image>model/images/embryos.jpg</large-image>
    <intro-text>
      &lt;p&gt;
      Gene expression data for &lt;i&gt;Drosophila melanogaster&lt;/i&gt; and &lt;i&gt;Anopheles gambiae&lt;/i&gt;.
      &lt;/p&gt;
    </intro-text>
    <tile-name>model/expression.jsp</tile-name>
    <aspect-source name="ArrayExpress" url="http://www.ebi.ac.uk/arrayexpress/"/>
    <aspect-source name="FlyAtlas" url="http://www.flyatlas.org/"/>
    <aspect-source name="FlyFish" url="http://fly-fish.ccbr.utoronto.ca/"/>
    <aspect-source name="BDGP in situ" url="http://www.fruitfly.org/cgi-bin/ex/insitu.pl/"/>
  </aspect>


  <aspect name="Regulation">
    <subtitle>Regulatory regions and&lt;br/&gt;transcription factor binding sites</subtitle>
    <icon-image>model/images/bindingSites.png</icon-image>
    <large-image>model/images/bindingSites.png</large-image>
    <intro-text>
      Regulatory elements (CRMs, enhancers, transcription factor binding sites) in &lt;i&gt;Drosophila melanogaster&lt;/i&gt; from REDfly, FlyBase and Tiffin.
    </intro-text>
    <tile-name>model/regulation.jsp</tile-name>
    <aspect-source name="REDfly" url="http://redfly.ccr.buffalo.edu/"/>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Tiffin" url="http://servlet.sanger.ac.uk/tiffin/"/>
  </aspect>

  <aspect name="Interactions">
    <subtitle>IntAct</subtitle>
    <icon-image>model/images/interaction.gif</icon-image>
    <large-image>model/images/interaction.gif</large-image>
    <tile-name></tile-name>
    <intro-text>
      Protein-protein interactions from IntAct (PSI-MI format), genetic interactions from the BioGRID and miRNA target predictions from miRBase.
    </intro-text>
    <tile-name>model/interactions.jsp</tile-name>
    <aspect-source name="IntAct" url="http://www.ebi.ac.uk/intact/"/>
    <aspect-source name="BioGRID" url="http://www.thebiogrid.org/"/>
    <aspect-source name="miRBase" url="http://microrna.sanger.ac.uk/targets/v4/"/>
  </aspect>

</aspects>