source: trunk/bio/tutorial/malariamine/webapp/resources/webapp/WEB-INF/aspects.xml @ 17328

<aspects>
  <aspect name="Genomics">
    <subtitle>Genome annotation</subtitle>
    <icon-image>model/images/genomics.gif</icon-image>
    <large-image>model/images/genomics.gif</large-image>
    <intro-text>
      The gene structure and other genome annotation in MalariaMine are provided by
      a variety of curated source databases.  In most cases MalariaMine includes
      all genome features that have chromosomal locations.
    </intro-text>
    <tile-name>model/genomics.jsp</tile-name>
    <aspect-source name="GeneDB" url="http://www.genedb.org"/>
  </aspect>
  <aspect name="Proteins">
    <subtitle>Protein and proteomics&lt;br/&gt;data</subtitle>
    <icon-image>model/images/proteins.png</icon-image>
    <large-image>model/images/proteins.png</large-image>
    <intro-text>
      Protein annotation (including family and domain annotation) from UniProt.
    </intro-text>
    <tile-name>model/proteins.jsp</tile-name>
    <aspect-source name="UniProt" url="http://www.uniprot.org"/>
  </aspect>
  <aspect name="Gene Ontology">
    <subtitle></subtitle>
    <icon-image>model/images/geneOntology.png</icon-image>
    <large-image>model/images/geneOntology.png</large-image>
    <intro-text>
      The Gene Ontology (GO) project is a collaborative effort to
      address the need for consistent descriptions of gene products in
      different databases.
&lt;p&gt;
      The GO collaborators are developing three structured, controlled
      vocabularies (ontologies) that describe gene products in terms of
      their associated biological processes, cellular components and
      molecular functions in a species-independent manner.
&lt;p&gt;
      GO annotations for &lt;i&gt;Plasmodium falciparum 3D7&lt;/i&gt; have
      been loaded into MalariaMine.  The GO annotations are 'attached' to
      Genes and so each gene has a reference (link) to a list of its GO
      annotations (if available).
    </intro-text>
    <tile-name>model/GO.jsp</tile-name>
    <aspect-source name="Gene Ontology Consortium" url="http://www.geneontology.org/"/>
  </aspect>
</aspects>